Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq909 91.5 1e-13 seq865 84.2 2e-11 >seq909 Length=350832 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| ||||| |||||||| || ||||||||| || || | || || ||| | Sbjct 176505 AAAATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAGGTTGAATCC 176446 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 |||| | || ||||| |||||| || || ||||| ||||| | || | Sbjct 176445 TCCGATACCATCGACAAT--GTCAAAGCCAAGATCCAAGACAAGGAAGGCATCCCACCAG 176388 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| | || || ||||||||||| | || |||| || | | | |||||| Sbjct 176387 ACCAGCAACGTCTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGAACCCTAGCCGATT 176328 Query 27965 ACAACATCCAAAAAGA 27980 ||||||||||||| || Sbjct 176327 ACAACATCCAAAAGGA 176312 >seq865 Length=406355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| ||||| || ||||| || || | || || |||||| || Sbjct 6785 ATGCAGATCTTTGTGAAGACTCTAACAGGGAAGACCATCACCCTCGAGGTTGAAAGCTCC 6726 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || || || |||||| |||| || | Sbjct 6725 GACACCATTGACAAC--GTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGACC 6668 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||||||||| || | || || | || | | | |||| |||| Sbjct 6667 AGCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGAACCCTAGCCGACTACA 6608 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | |||||||| | ||| | ||||| || Sbjct 6607 ACATCCAGAAGGAGTCCACCCTTCATTTGGTCCTTCGTCTTCGTGGTGG 6559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355522971992874