Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1663 93.3 4e-14 seq909 89.7 4e-13 seq1099 82.4 7e-11 >seq1663 Length=237253 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||||||||| ||| |||| ||||||||||| || || || Sbjct 10402 CTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGTTTTCCGGCGAA 10343 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||||||||||||||| | ||| | || || ||||| ||| || ||| | | Sbjct 10342 GATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATT 10283 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || || || || || || | || || |||| || || || ||||| || Sbjct 10282 GTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCAC 10223 Query 39273 AAAGATTTGCATCTTT 39288 ||||| ||||| ||| Sbjct 10222 GAAGATCTGCATTTTT 10207 >seq909 Length=350832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| || || |||||||| || ||||| |||| ||||||||||| || || || Sbjct 176312 TCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCAAGCTGTTTTCCGGCGAAG 176371 Query 39154 ATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || ||||| |||||||| |||||| | || || ||||| ||| || ||||| | Sbjct 176372 ATGAGACGTTGCTGGTCTGGTGGG-ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATT 176430 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | |||||| || || || || | || || |||| || || || ||||| || Sbjct 176431 GTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCAC 176490 Query 39273 AAAGATTTGCATCTTT 39288 || || ||||| ||| Sbjct 176491 GAAAATCTGCATTTTT 176506 >seq1099 Length=206994 Score = 82.4 bits (90), Expect = 7e-11 Identities = 168/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || || || |||| || | ||| | ||| || || ||| || || || Sbjct 75140 AAATATCTGCATCCCACCCCTTAGACGGAGCACAAGATGAAGGGTTGACTCCTTCTGGAT 75081 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 || ||||| || || || ||| | || ||||| || || || ||||| || ||||| || Sbjct 75080 GTTGTAATCAGCGAGGGTACGTCCATCCTCAAGTTGCTTTCCGGCAAAGATCAGACGTTG 75021 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC-GTAT 39223 |||||| | || | | |||||| || ||| || || | | | | | || || | Sbjct 75020 CTGGTCTGGAGGAATTCCCTCTTTATCTTGGATCTTG-GTCTTAACATTGTCAATAGTGT 74962 Query 39224 CGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 || ||| || |||| || ||| ||||||| || || || || || |||||||||| Sbjct 74961 CGGAACTCTCAACCTCCAGAGTTATAGTTTTTCCGGTAAGAGTCTTGACGAAGATTTGCA 74902 Query 39284 TCTTTAC 39290 ||| ||| Sbjct 74901 TCTGTAC 74895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429135891621206