Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq40 138 1e-27 seq66 95.1 1e-14 >seq40 Length=1826671 Score = 138 bits (152), Expect = 1e-27 Identities = 553/863 (64%), Gaps = 16/863 (2%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 ||| || ||||| |||| ||| || ||||| ||||| || |||| | ||||| Sbjct 1767080 TTTCTGATATTCCCCAACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTGAAGAGAAATCAA 1767021 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 ||||| ||||||| || || | ||| || ||||| || || | | Sbjct 1767020 CTCCATCCAATCAAATGGGTTTACCACACCGTACACCTTACCACACCCAAGTGCAGCTAA 1766961 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 ||||| ||||| ||||| || || ||||| ||||| || || ||||| || || | | Sbjct 1766960 CAATCTATCAGCAACAAACTCAATGTACTGACTCATAAGCTCACAGTTCATCCCTACCAG 1766901 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | || || |||| | |||| || || |||| || | || |||||| | ||| Sbjct 1766900 CTTTACCGGCAGCGAATCCGTCACGAATTCGCGTTCGATCGCCACCGCTTCTTCCACTAT 1766841 Query 4496 ATCTTTTATTTTATCT----TTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACG 4551 | | | ||| || |||| | ||| || | ||| | ||| || || | Sbjct 1766840 TGCCTGAACTTTCTCCACACTTAGCTT-TTTCTTCAACAAG---CTGTACAGCAAGCAGG 1766785 Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCG 4610 |||||||||| || | ||||| || | || | |||| ||||| || || ||||||||| Sbjct 1766784 CAAAATCACAGTGAAGCCCTTCATCAC-GCGATATCAACTCGTTTGAGAAGGTTAATCCG 1766726 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 |||||||| || | |||||| ||||| ||||| | | || ||||| ||||| || Sbjct 1766725 GGCATTAACCCGCGCTTTTTCAGCCAGAATATGGAGCAGAAGCTTCCAGAGAAGAAAATC 1766666 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 ||||| || || || || | | || |||| || ||| ||| ||| Sbjct 1766665 CCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGATTCTGCTCCGTC---GATC 1766609 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790 ||| | ||||| | ||||| ||||| || || || || || | || ||| || Sbjct 1766608 CATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCGATTGCGCGGAAG 1766549 Query 4791 AATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCA 4850 | | ||| | ||||| || || || |||| || ||| ||||||||| Sbjct 1766548 AGGTGGGATTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGGAATACATTTCC 1766489 Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGA 4910 || || || ||||| || || || || || ||||| ||| | || |||| ||| || Sbjct 1766488 GAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCCTCTGCTACCTGG 1766429 Query 4911 ACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAA 4970 || || || |||||| | | | |||||| || || |||||| ||| || || Sbjct 1766428 ACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCAGAGGCGGCGAAG 1766369 Query 4971 AACGCCAAAACATGAGATATAAAGTACTGTTCGTCAG-GCTTA--AGTTTTTTCCAGTGG 5027 || || | | || | || |||| || ||||| | | | | | |||| ||||||| Sbjct 1766368 AAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATGTTTTCCCAGTGG 1766309 Query 5028 GGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTG 5087 | || | | | ||| |||||||| | ||||| || || ||||| ||||| ||| Sbjct 1766308 CGGTTGTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCTTCAGCTTTCTTG 1766249 Query 5088 TACATAGACCAAATATCAGGATA 5110 ||||| ||| || | ||||| Sbjct 1766248 TACATTTCCCAGATTTGTGGATA 1766226 >seq66 Length=1001823 Score = 95.1 bits (104), Expect = 1e-14 Identities = 357/554 (64%), Gaps = 12/554 (2%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603 || || || || ||||| || | |||||||||| || | ||||| ||||| || || || Sbjct 953105 AAGCAGGCGAAGTCACAGTGAAGCCCTTCGTCTC-GCGATATCAGCTCGTTTGAGAAGGT 953047 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATAT--AGCGGCAAATGACCCAGAA 4661 ||||||||||||||| || | |||||| ||||| ||||| ||| | || | || || Sbjct 953046 TAATCCGGGCATTAACCCGCGCTTTTTGAGCCAGAATATGGAGCAGAAACT--TCCGGAG 952989 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 ||||| || ||||| ||| || || || | || | | || ||| || | Sbjct 952988 AAGAAGATCCCTTCAACGCAAGCGAAAGCAATTA---GCCTCTCGGCAAAGCATTCTGCG 952932 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATA 4781 | | ||||||| | ||||| | ||||| ||||| ||||| || || || | || Sbjct 952931 CCGTCAATCCATCGGAGGGCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTCGATT 952872 Query 4782 GCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 || || | | ||| || ||||| || || || |||| || || Sbjct 952871 GCTCGGAAGAGGTGGGATTTAAGCTCTGAGTCTTTGATGTAGGTTTCTAGGAGGAGAGAG 952812 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 |||||||| || || || ||||| || || || || || ||||| ||| | || || Sbjct 952811 TACATTTCGGAGTGGATGTTTTCGATTGCTATTTGGAACCCGTAGAAGGCGCGCGCCTCA 952752 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 | || || || || || ||||| | | | ||||| ||||| ||||| | Sbjct 952751 GCAACCTGGACCTCTTTCATGAATCTGCCGGCGAGATTTTCTAGGACTATGCCGTCGGAG 952692 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAG---TTTT 5018 || || || || || | | ||| | ||||||| || ||||| | | || || Sbjct 952691 GCGGCGAAGAAGGCGAGGATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGAGCGCGGTT 952632 Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078 | ||| || | |||| | | || |||||||| | ||||| || || ||||| Sbjct 952631 TCCCAATGACGGTTGTCTTGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAGGAGGCTTCA 952572 Query 5079 GCTTTTTTGTACAT 5092 || || |||||||| Sbjct 952571 GCCTTCTTGTACAT 952558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426642272351246