Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq40 188 1e-42 seq66 176 6e-39 seq752 93.3 6e-14 seq477 84.2 3e-11 >seq40 Length=1826671 Score = 188 bits (208), Expect = 1e-42 Identities = 587/900 (65%), Gaps = 23/900 (3%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| |||||||| || || | ||||| || || ||||| || |||| | || || Sbjct 1767080 TTTCTGATATTCCCCAACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTGAAGAGAAATCAA 1767021 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 ||||| |||||||||| || || || || | || | | || | | | | | Sbjct 1767020 CTCCATCCAATCAAATGGGTTTACCACACCGTACACCTTACCACACCCAAGTGCAGCTAA 1766961 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 || |||||| ||||| || || || || |||| | ||||| ||||| |||| || Sbjct 1766960 CAATCTATCAGCAACAAACTCAATGTACTGACTCATAAGCTCACAGTTCATCCCTACCAG 1766901 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATC---CACTAT 48085 || || || || | ||||| | || || ||||||| | || || || |||||| Sbjct 1766900 CTTTACCGGCAGCGAATCCGTCACGAATTCGCGTTCGATCGCCACCGCTTCTTCCACTAT 1766841 Query 48086 TATCGATGTTACCGTTTCCTCACTTGG---TGGATACAACAAA-TGTTTAAACATTAAAC 48141 | | || || | ||| ||||| | | | |||||| ||| ||| || | Sbjct 1766840 TGCC--TGA-ACTTTCTCCACACTTAGCTTTTTCTTCAACAAGCTGT----ACAGCAAGC 1766788 Query 48142 ATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGAC 48201 | ||||||||||| ||||| |||||||| | || || ||||| || || || | | Sbjct 1766787 AGGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGAAGGTTAATC 1766728 Query 48202 CGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATA 48261 ||||||||| || || ||||| ||||| ||||| | ||| |||||| ||||| | Sbjct 1766727 CGGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGAGCAGAAGCTTCCAGAGAAGAAAA 1766668 Query 48262 TGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC-GTT--GTGTA 48318 | ||||| || || || || ||||||| || || | || ||| | | || | Sbjct 1766667 TCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAA---GGATTCTGCTCCGTCGA 1766611 Query 48319 TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378 |||| || | |||||||| || |||||||| ||||| || || || || || || | Sbjct 1766610 TCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCGATTGCGCGGA 1766551 Query 48379 AGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTT 48438 |||| | ||| | | ||||| | ||| || |||| | || |||||||| Sbjct 1766550 AGAGGTGGGATTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGGAATACATTT 1766491 Query 48439 CGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCT 48498 | ||||| || |||||||| || || || || ||||| || | ||| |||| | || Sbjct 1766490 CCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCCTCTGCTACCT 1766431 Query 48499 GTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAA 48558 | || || | |||| | | || | ||| || || || || ||| || || | Sbjct 1766430 GGACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCAGAGGCGGCGA 1766371 Query 48559 AAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG---TTTATTCCAGT 48615 | || || | | || | || || | || |||| || || || || | ||||| Sbjct 1766370 AGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATGTTTTCCCAGT 1766311 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 | | || | ||| | ||| |||||||| || ||||| || || || || ||||| | Sbjct 1766310 GGCGGTTGTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCTTCAGCTTTCT 1766251 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 | ||||| | ||| || | |||| ||||||||| ||| ||||||| ||| |||| Sbjct 1766250 TGTACATTTCCCAGATTTGTGGATATTTGATTGGGAACATACAGAATCTATCTGGGTTTT 1766191 >seq66 Length=1001823 Score = 176 bits (194), Expect = 6e-39 Identities = 577/894 (65%), Gaps = 11/894 (1%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| |||||||| || || | || || || || ||||| || |||| | || || Sbjct 953394 TTTCTGATATTCCCCAACTCTCTTTTCAAAGAAGTTAGTCTTCCCTTGAAGAGAGATCAA 953335 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 ||||| |||||||||| || || || || | || | | || | | | | Sbjct 953334 CTCCATCCAATCAAATGGGTTTACCACACCGTACACCTTACCACACCCAAGCGCAGCCAA 953275 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 || |||||||| || || || ||||| |||||| ||||| ||||| |||| || Sbjct 953274 AAGCCTATCTGCGACAAACTCAATATACTGACTCATCAGCTCACAGTTCATCCCTACCAG 953215 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 || || || || | ||||| | || || | ||||| | || || || ||| || Sbjct 953214 CTTTACAGGCAGCGAATCCGTCACGAATTCACGCTCGATTGCCACCGCTTCTTCTACGAT 953155 Query 48089 CGATGTTACCGTTTCCTCACTTGGTGGATAC---AACAAA-TGTTTAAACATTAAACATG 48144 || || | ||| ||||| || | | ||||| ||| ||| || || | Sbjct 953154 TGACTGGACTTTCTCCACACTTAGTTTCTTCTTCAACAAGCTGT----ACAGCAAGCAGG 953099 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 | || ||||| ||||| ||||| |||| || | ||||| || || || | |||| Sbjct 953098 CGAAGTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAATCCGG 953039 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGC 48264 |||||| || || ||||||||||| ||||| | |||| ||| || ||||| || | Sbjct 953038 GCATTAACCCGCGCTTTTTGAGCCAGAATATGGAGCAGAAACTTCCGGAGAAGAAGATCC 952979 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACC 48324 |||| ||| || || || | || ||||| | | | || || || ||||| | Sbjct 952978 CTTCAACGCAAGCGAAAGCAATTAGCCTCTCGGCAAAGCATTCTGCGCCGTCAATCCATC 952919 Query 48325 GTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 48384 | | ||||| || || |||||||| || || || || || || || || ||||| Sbjct 952918 GGAGGGCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTCGATTGCTCGGAAGAGGT 952859 Query 48385 AGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGT 48444 | ||| | ||||| | ||| || |||| | ||| ||||||||||||| Sbjct 952858 GGGATTTAAGCTCTGAGTCTTTGATGTAGGTTTCTAGGAGGAGAGAGTACATTTCGGAGT 952799 Query 48445 GAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCT 48504 | || ||||| ||||| || || || ||||| || | ||| || | | ||| |||| Sbjct 952798 GGATGTTTTCGATTGCTATTTGGAACCCGTAGAAGGCGCGCGCCTCAGCAACCTGGACCT 952739 Query 48505 CCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATG 48564 | | |||| | || | ||| || ||||| || || || || || || | Sbjct 952738 CTTTCATGAATCTGCCGGCGAGATTTTCTAGGACTATGCCGTCGGAGGCGGCGAAGAAGG 952679 Query 48565 CTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG---TTTATTCCAGTCATTGA 48621 | | | ||| | ||||| | || |||| || || || | | ||| | | | Sbjct 952678 CGAGGATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGAGCGCGGTTTCCCAATGACGGT 952619 Query 48622 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACA 48681 | |||| ||| | ||||||||||| |||||||| || || || || || || || |||| Sbjct 952618 TGTCTTGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAGGAGGCTTCAGCCTTCTTGTACA 952559 Query 48682 TATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 | | ||| || | ||||| ||||||||| ||| ||||||| ||| |||| Sbjct 952558 TCTCCCAGATTTGTGGGTATTTGATTGGGAACATACAGAATCTATCTGGGTTTT 952505 >seq752 Length=99127 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||||| || || | |||| | |||| |||||| |||| ||| || Sbjct 76764 CCTCCTTGGTCAACATATCGTGCAGTATCATTAAACACTCGCAACATAGGAACAATGCCA 76823 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| ||||| || ||| |||||||||||| | || || || || || || Sbjct 76824 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGAACAGAA 76883 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | ||| || ||||| | || || | | || | ||| || ||||| || || || || Sbjct 76884 ACCCCAATACCTCCAG-CAGATTTGCTGATGACAGCACACTCCTTCAAAGTGTCATAAAT 76942 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || || ||||| |||| || | ||||| |||||| Sbjct 76943 CCCTTCAATGCTATCATCTTTCATATTGATCAGAAAGCAGCTA 76985 >seq477 Length=199787 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||||| || || | |||| | |||| |||||| || | ||| || Sbjct 10371 CCTCCTTGGTCAACATATCGTGCAGTATCATTAAACACTCGCAACATAGGGACAATGCCA 10312 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| ||||| || ||| |||||||||||| | || || || || || || Sbjct 10311 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGAACAGAA 10252 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | ||| || ||||| | || || | | || | ||| || |||| || || || || Sbjct 10251 ACCCCAATACCTCCAG-CAGATTTGCTGATGACAGCACACTCCTTCAGAGTGTCATAAAT 10193 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || || ||||| |||| || | ||||| |||||| Sbjct 10192 CCCTTCAATGCTATCATCTTTCATATTGATGAGAAAGCAGCTA 10150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693989222879680