Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq40 156 6e-33 seq66 145 1e-29 seq752 125 1e-23 seq477 116 5e-21 >seq40 Length=1826671 Score = 156 bits (172), Expect = 6e-33 Identities = 569/890 (64%), Gaps = 3/890 (0%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || ||||| || || | ||||| || || ||||| || |||| | || || Sbjct 1767080 TTTCTGATATTCCCCAACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTGAAGAGAAATCAA 1767021 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| ||||||| || || ||| || | || | | || | | | | | Sbjct 1767020 CTCCATCCAATCAAATGGGTTTACCACACCGTACACCTTACCACACCCAAGTGCAGCTAA 1766961 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || |||||| ||||| || || || ||| |||| | ||||| ||||| |||| || Sbjct 1766960 CAATCTATCAGCAACAAACTCAATGTACTGACTCATAAGCTCACAGTTCATCCCTACCAG 1766901 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 || ||||| || | ||||| | || || |||| || | || || || | ||| Sbjct 1766900 CTTTACCGGCAGCGAATCCGTCACGAATTCGCGTTCGATCGCCACCGCTTCTTCCACTAT 1766841 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 | ||| | ||| ||||| | | | |||| | ||| || || ||||| Sbjct 1766840 TGCCTGAACTTTCTCCACACTTAGCTTTTTCTTCAACAAGCTGTACAGCAAGCAGGCAAA 1766781 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 |||||| ||||| |||||||| | || || ||||| || || || | || ||||| Sbjct 1766780 ATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGAAGGTTAATCCGGGCAT 1766721 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 || || |||||||| ||||| ||||| | ||| |||||| ||||| || ||||| Sbjct 1766720 TAACCCGCGCTTTTTCAGCCAGAATATGGAGCAGAAGCTTCCAGAGAAGAAAATCCCTTC 1766661 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTTTG 46817 ||| ||||| || | |||||| || || | | | | ||||| | | Sbjct 1766660 AACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGATTCTGCTCCGTCGATCCATCGGAG 1766601 Query 46818 AGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 46877 |||||||| || || ||||| ||||| || || || || || || ||||| | Sbjct 1766600 GGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCGATTGCGCGGAAGAGGTGGGA 1766541 Query 46878 tttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAAT 46937 ||| || ||||| | || || |||| | || ||||||||| || || || Sbjct 1766540 TTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGGAATACATTTCCGAGTGGAT 1766481 Query 46938 GTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGT 46997 ||||||||| || || || || ||||| || | || || | | ||| || ||| | Sbjct 1766480 GTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCCTCTGCTACCTGGACGTCTTT 1766421 Query 46998 ACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAA 47057 |||| | | | | ||| || || || || ||| || || || || || | Sbjct 1766420 CATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCAGAGGCGGCGAAGAAGGCGAG 1766361 Query 47058 TACATGTTTAATAAAATATTTTTCATCGGTAGTCAG---TTTATTCCAGTCATTGATATC 47114 | || | || || | || || |||| || || || | ||||| | | || Sbjct 1766360 GATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATGTTTTCCCAGTGGCGGTTGTC 1766301 Query 47115 TTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATT 47174 | ||| | ||| |||||||| || |||||||| || || || ||||| || ||||| | Sbjct 1766300 CTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCTTCAGCTTTCTTGTACATTTC 1766241 Query 47175 CCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 ||| || | |||||| ||| || || ||| ||||||| ||| |||| Sbjct 1766240 CCAGATTTGTGGATATTTGATTGGGAACATACAGAATCTATCTGGGTTTT 1766191 >seq66 Length=1001823 Score = 145 bits (160), Expect = 1e-29 Identities = 494/769 (64%), Gaps = 3/769 (0%) Strand=Plus/Minus Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || |||||||| || || || |||||| |||||| ||||| ||||| |||| || Sbjct 953273 AGCCTATCTGCGACAAACTCAATATACTGACTCATCAGCTCACAGTTCATCCCTACCAGC 953214 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 || || || || | ||||| | || || | || || | || || || || || Sbjct 953213 TTTACAGGCAGCGAATCCGTCACGAATTCACGCTCGATTGCCACCGCTTCTTCTACGATT 953154 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 || ||| | ||| ||||| || | | |||| | ||| || || || || Sbjct 953153 GACTGGACTTTCTCCACACTTAGTTTCTTCTTCAACAAGCTGTACAGCAAGCAGGCGAAG 953094 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 ||||| ||||| ||||| |||| || | ||||| || || || | || |||||| Sbjct 953093 TCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAATCCGGGCATT 953034 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 | || |||||||||||||| ||||| | |||| ||| || ||||| || ||||| Sbjct 953033 AACCCGCGCTTTTTGAGCCAGAATATGGAGCAGAAACTTCCGGAGAAGAAGATCCCTTCA 952974 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTTTGA 46818 || ||||| || | || ||||| | | | | | | |||||| | | Sbjct 952973 ACGCAAGCGAAAGCAATTAGCCTCTCGGCAAAGCATTCTGCGCCGTCAATCCATCGGAGG 952914 Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 ||||| || || || ||||| || || || || || || || || ||||| | | Sbjct 952913 GCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTCGATTGCTCGGAAGAGGTGGGAT 952854 Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 || || ||||| | || || |||| | ||| |||||||| || || ||| Sbjct 952853 TTAAGCTCTGAGTCTTTGATGTAGGTTTCTAGGAGGAGAGAGTACATTTCGGAGTGGATG 952794 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 ||||| || || || || || ||||| || | || |||| || ||| |||||| | Sbjct 952793 TTTTCGATTGCTATTTGGAACCCGTAGAAGGCGCGCGCCTCAGCAACCTGGACCTCTTTC 952734 Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 |||| | | | ||| || ||||| || || || || || || || | Sbjct 952733 ATGAATCTGCCGGCGAGATTTTCTAGGACTATGCCGTCGGAGGCGGCGAAGAAGGCGAGG 952674 Query 47059 ACATGTTTAATAAAATATTTTTCATCGGTAGTCAG---TTTATTCCAGTCATTGATATCT 47115 | ||| | ||||| | || || |||| || || | | ||| | | | | ||| Sbjct 952673 ATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGAGCGCGGTTTCCCAATGACGGTTGTCT 952614 Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 | ||| | ||||||||||| ||||||||||| || || || || || || ||||| | | Sbjct 952613 TGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAGGAGGCTTCAGCCTTCTTGTACATCTCC 952554 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 || || | | |||| ||| || || ||| ||||||| ||| |||| Sbjct 952553 CAGATTTGTGGGTATTTGATTGGGAACATACAGAATCTATCTGGGTTTT 952505 >seq752 Length=99127 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||||| ||||| | |||| | |||| |||||| |||| |||||| Sbjct 76764 CCTCCTTGGTCAACATATCGTGCAGTATCATTAAACACTCGCAACATAGGAACAATGCCA 76823 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||| || ||| |||||||||||| ||||| || || || ||| Sbjct 76824 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGAACAGAA 76883 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| ||| | |||||| ||||| |||||||| || Sbjct 76884 ACCCCAATACCTCCAGCAGATTTGCTGATGACAGCACACTCCTTCAAAGTGTCATAAATC 76943 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || |||||||| |||| || | ||||| |||||| Sbjct 76944 CCTTCAATGCTATCATCTTTCATATTGATCAGAAAGCAGCTA 76985 >seq477 Length=199787 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||||| ||||| | |||| | |||| |||||| || | |||||| Sbjct 10371 CCTCCTTGGTCAACATATCGTGCAGTATCATTAAACACTCGCAACATAGGGACAATGCCA 10312 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||| || ||| |||||||||||| ||||| || || || ||| Sbjct 10311 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGAACAGAA 10252 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| ||| | |||||| |||| |||||||| || Sbjct 10251 ACCCCAATACCTCCAGCAGATTTGCTGATGACAGCACACTCCTTCAGAGTGTCATAAATC 10192 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || |||||||| |||| || | ||||| |||||| Sbjct 10191 CCTTCAATGCTATCATCTTTCATATTGATGAGAAAGCAGCTA 10150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712236954099840