Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq20 109 5e-19 seq810 107 2e-18 seq1435 98.7 9e-16 seq865 96.9 3e-15 seq909 93.3 4e-14 >seq20 Length=1286389 Score = 109 bits (120), Expect = 5e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| || || || |||||||| ||||| ||||||| ||||| || Sbjct 250554 AGACGAAGCACCAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGG 250495 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| |||||||| || || ||||| ||||| | || | || ||| Sbjct 250494 CCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCC 250435 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 || || ||| || ||| | | | || | | ||| || || ||||| | || Sbjct 250434 TTATCTTGGATCTTGGCCTTGA-CATTGTCAATGGTATCGGAGGATTCAACCTCTAGGGT 250376 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| ||||| ||||| || || || |||||||||||||| || Sbjct 250375 TATGGTTTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTT 250334 >seq810 Length=562993 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||||||||| | | Sbjct 115534 CCACCACGCAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCG 115593 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||| ||||| || |||| | ||| ||||| | |||| Sbjct 115594 AGGGTTCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 115653 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| || ||| || |||| ||| | | | |||||| || || Sbjct 115654 ATACCCTCCTTATCTTGGATCTTAGCCTTC-ACGTTGTCAATTGTGTCGGAGCTTTCAAC 115712 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || ||||| || ||||| || || |||||||| Sbjct 115713 CTCCAGGGTAATGGTCTTTCCCGTAAGAGTCTTCACAAAGATCTGCAT 115760 Score = 104 bits (114), Expect = 2e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| || || || || | || || | | | || || ||||||||||||||||| Sbjct 115113 CTCTTTCTGGATATTGTAATCCGCAAGAGTCCTCCCATCCTCCAGCTGCTTGCCGGCGAA 115172 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| | ||| ||||| | ||||| || |||||||| | ||| | || || | ||| Sbjct 115173 AATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGT-CTTGAATCTTCGCCTTAACAT 115231 Query 41791 CGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846 | | | ||||| ||| ||| ||||||| ||| || || || ||||||| |||| Sbjct 115232 TGTCGATGGTGTCTGAGCT---CTCAACCTCCAACGTGATGGTCTTTCCCGTCAAGGTCT 115288 Query 41847 TTACGAAAATCTGCAT 41862 | |||||||||||||| Sbjct 115289 TGACGAAAATCTGCAT 115304 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | |||||| || || || ||||||||| ||||| ||||| | | || || | Sbjct 115317 ACGGAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCC 115376 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || || ||||| || ||||| |||| | ||| ||||| | ||||| | |||||| Sbjct 115377 ATCCTCAAGTTGCTTACCCGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTT 115436 Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTA 41825 ||| ||| ||||||| | || | || | ||||| ||||||||| | || | Sbjct 115437 ATCC-TGAATTTTTGCCTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCTAAGGTGA 115495 Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || || || ||||| || ||||||||||| Sbjct 115496 TGGTCTTTCCGGTGAGGGTCTTGACAAAAATCTGCAT 115532 >seq1435 Length=543809 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || |||||||||||||| || |||| | Sbjct 91953 CCACCACGAAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCGGCG 91894 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || | ||||| |||||||| |||||||| || ||||||| || Sbjct 91893 AGTGTTCTTCCATCCTCTAATTGCTTCCCGGCGAAGATCAGGCGTTGCTGGTCCGGTGGG 91834 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||| | || | || |||| ||| | | | || ||| || ||||| Sbjct 91833 ATTCCCTCTTTGT-CTTGGATCTTGGCTTTGACGTTGTCGATTGTATCGGAGGATTCCAC 91775 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||||| ||||| || || || || || |||||||| ||||| Sbjct 91774 TTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATTTGCAT 91727 >seq865 Length=406355 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | ||||||||| || ||| |||||||| ||||| ||||| | | || || | Sbjct 6342 ACGGAGCACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCC 6401 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || |||||||| ||||| || |||| | ||| ||||| | ||| | | ||||| Sbjct 6402 ATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTT 6461 Query 41767 GTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTA 41825 || |||||| ||| | || | || ||||||| ||||||||||| || | Sbjct 6462 ATCTTGGATTTTGGCCTTTA-CGTTGTCAATAGTGTCGGAGCTCTCCACCTCCAAGGTGA 6520 Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || || || ||||| || ||||||||||| Sbjct 6521 TGGTCTTTCCTGTAAGAGTCTTAACAAAAATCTGCAT 6557 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||||||||| || || | Sbjct 5647 CCACCACGAAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 5706 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || || || || || || || |||| | ||| ||||| | ||| Sbjct 5707 AAGGTGCGACCATCCTCAAGTTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGG 5766 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTC---GCTCGACTC 41811 | | |||||||||| ||| || ||||| | | | | ||||| ||| ||| Sbjct 5767 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTATCA-ATCGTGTCCGAGCT---CTC 5822 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || ||||| |||| ||||| || ||||||||||| Sbjct 5823 AACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAAATCTGCAT 5873 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || || ||||||||| ||||| ||||| | Sbjct 6103 CCACCACGAAGACGGAGAACCAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 6162 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || ||||||||||| || || |||| | ||| ||||| | ||| Sbjct 6163 AAAGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGG 6222 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| | || || | || | | | ||||| ||| || Sbjct 6223 ATGCCTTCCTTGT-CTTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAAC 6281 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || |||| || || |||||||||||||| Sbjct 6282 CTCCAAGGTAATAGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 6329 >seq909 Length=350832 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || || ||||| || ||||| || |||| ||||| || Sbjct 176285 AGACGAAGAACCAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGG 176344 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||| || |||||||| || || || || ||||| | || | || ||| Sbjct 176345 CCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCC 176404 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 ||||| ||| || |||| || | | | || ||| || || ||||| | || Sbjct 176405 TTGTCTTGGATCTTG-GCTTTGACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGT 176463 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 ||| ||||| || || || || || |||||||||||||| || || Sbjct 176464 TATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATTTTTTC 176508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461851739554400