Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq6695 127 2e-24 seq1104 111 2e-19 >seq6695 Length=6602074 Score = 127 bits (140), Expect = 2e-24 Identities = 474/726 (65%), Gaps = 23/726 (3%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || |||| || || || ||||| ||||| || || |||| ||| ||||| |||| Sbjct 4469036 TGATACTCGCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGTAGCGATATCAGCTCC 4468977 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || ||||||| ||||| | | | | ||| |||||| || | | | | Sbjct 4468976 ATCCAATCAAATGGATTTGGCACACCGTACACCTTACCGTACCCAAGCGCACCCAGCAGC 4468917 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 | |||||| ||||| || || ||||||| ||| || || | |||||| || | | ||| Sbjct 4468916 CGATCCGCCACAAACTCGATGTATTGGCTCATCAAGTCACGGTTCATCCCCACCA-ACGC 4468858 Query 16856 ACC-GGAAGAGCTTC-CGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT-- 16911 | || ||||| || | | || || | ||| || | || || || | || Sbjct 4468857 GCATGGCAGAGCGTCGCATACGAACTCTCT-CTCGATGTCGACGGCGTCGCGGACGATTG 4468799 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971 ||| | || || ||||||| | | | | || | | | | ||||| ||||| Sbjct 4468798 ACTTG--ACGCGCTCCTCGGTCAGCTTGGTCCTGAGGAGACTGTATAGGAGACACGCGAA 4468741 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 |||||| || | || ||||||| ||| | |||||| || || || || || ||||| Sbjct 4468740 ATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGGCAT 4468681 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 | || || || |||| |||||| |||||| ||| || || ||||| || || || Sbjct 4468680 CAACCCCCGCTTTTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAGATCCCTTC 4468621 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTA-CGTCGCGTCTTTGTTACGAATCCATT 17150 |||| | || || ||||| | || |||||| | | | | | | || || ||||||| Sbjct 4468620 GACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGAC-CCGT--CG-ATCCATT 4468565 Query 17151 TCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA----T 17206 || |||||| || || | | | |||| | || || ||||| ||| | Sbjct 4468564 TCATTGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACGAAAGAGGT 4468505 Query 17207 AATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 | ||||| |||| | | || | || || ||||||| |||||| |||||||| || Sbjct 4468504 GGTCTCTCTCTTTC--GCA--TCCTTGATGTAGGTATCGAGGAGTAGACTGTACATCTCC 4468449 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGA 17326 ||||| || ||||| || || |||||||| ||||| ||| || || |||| | || Sbjct 4468448 GAGTGGATATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGACCTGG 4468389 Query 17327 ACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAA 17385 || ||| || | ||| || || || || || |||||| ||||| || ||||| Sbjct 4468388 ACATCCGACAT-GAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCCGCGAA 4468330 Query 17386 AAACGC 17391 ||||| Sbjct 4468329 GAACGC 4468324 >seq1104 Length=4098138 Score = 111 bits (122), Expect = 2e-19 Identities = 253/373 (68%), Gaps = 7/373 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||||||||| || | || ||||||| ||| | ||||| || || || Sbjct 1191355 AGGCACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTT 1191414 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 || || ||||| || || || || | ||||||||||||| ||| || || ||| Sbjct 1191415 AATCCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAG 1191474 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTC-GCGTCTTTGTT 17139 || || || || ||| | || || ||||| | || |||||| | || | | | || Sbjct 1191475 AAGATCCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGAC-CCGT- 1191532 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 || ||||||||| | |||||| || || | | |||| || || || ||||| Sbjct 1191533 -CG-ATCCATTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGC 1191590 Query 17200 CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 ||| | | ||| | |||| ||| |||| || || |||| ||| || ||||| Sbjct 1191591 GCGAAAAAGGTGGTCTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTA 1191650 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCG 17318 ||| || || || |||||||| || || ||||| || ||||| || ||| || || |||| Sbjct 1191651 CATCTCCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCA-CGCGCCTCCG 1191709 Query 17319 CTATTTGAACTTC 17331 | | ||||| || Sbjct 1191710 CGACCTGAACATC 1191722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517466357299320