Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6695 116 4e-21 >seq6695 Length=6602074 Score = 116 bits (128), Expect = 4e-21 Identities = 383/586 (65%), Gaps = 16/586 (3%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||||||||| ||||| || || |||||||||| ||| | |||||| || |||||| Sbjct 4468751 AGACACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTT 4468692 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT--CGCAGCAAATGACCCCGAAA 16316 || || ||||| || || || |||| ||| || || ||||| || || || || | Sbjct 4468691 AATCCCGGCATCAACCCCCGCTTTTTTAGCCAAAAAATCGCGCAGAAACTG--CCGGAGA 4468634 Query 16317 AGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTA-CGTAG-CATCTTT 16374 |||| || || || || | || || ||||| | || || ||| | | | | | | | Sbjct 4468633 AGAAGATCCCTTCGACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGACCCGT 4468574 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || ||||||||| | |||| | || || | | ||| | || || || Sbjct 4468573 ----CG-ATCCATTTCATTGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGAT 4468519 Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 ||| ||| | | ||| | || | ||| | || || ||||| | |||| ||| Sbjct 4468518 GGCACGAAAGAGGTGGTCTCTCTCTTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACT 4468459 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 |||||| || ||||| || ||||| || || |||||||| || |||||| || ||||| Sbjct 4468458 GTACATCTCCGAGTGGATATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTC 4468399 Query 16555 CGCTATTTGTACTTCC-ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 || | || || ||| || | || || || |||||||| |||||||||||| Sbjct 4468398 CGAGACCTGGACATCCGACAT-GAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCG 4468340 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAG---AA 16670 || || || ||||| | | ||| | ||||| | ||| || | || | Sbjct 4468339 AGGCCGCGAAGAACGCGAGCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCA 4468280 Query 16671 TATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730 | | |||||| | ||| | || | ||| || || || | |||||||| |||| Sbjct 4468279 TCTCCCAATCGCGAACATCCTGCGACAGATCGACCTCCTCGGCAGTCCAAAATGAAGCCT 4468220 Query 16731 CTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 | ||||| || ||||| | ||| || | |||||| || ||||| Sbjct 4468219 CGGCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGAAA 4468174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511336096062680