Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq6695 116 4e-21
>seq6695
Length=6602074
Score = 116 bits (128), Expect = 4e-21
Identities = 383/586 (65%), Gaps = 16/586 (3%)
Strand=Plus/Minus
Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258
||||||||||| ||||| || || |||||||||| ||| | |||||| || ||||||
Sbjct 4468751 AGACACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTT 4468692
Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT--CGCAGCAAATGACCCCGAAA 16316
|| || ||||| || || || |||| ||| || || ||||| || || || || |
Sbjct 4468691 AATCCCGGCATCAACCCCCGCTTTTTTAGCCAAAAAATCGCGCAGAAACTG--CCGGAGA 4468634
Query 16317 AGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTA-CGTAG-CATCTTT 16374
|||| || || || || | || || ||||| | || || ||| | | | | | | |
Sbjct 4468633 AGAAGATCCCTTCGACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGACCCGT 4468574
Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434
|| ||||||||| | |||| | || || | | ||| | || || ||
Sbjct 4468573 ----CG-ATCCATTTCATTGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGAT 4468519
Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494
||| ||| | | ||| | || | ||| | || || ||||| | |||| |||
Sbjct 4468518 GGCACGAAAGAGGTGGTCTCTCTCTTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACT 4468459
Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554
|||||| || ||||| || ||||| || || |||||||| || |||||| || |||||
Sbjct 4468458 GTACATCTCCGAGTGGATATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTC 4468399
Query 16555 CGCTATTTGTACTTCC-ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613
|| | || || ||| || | || || || |||||||| ||||||||||||
Sbjct 4468398 CGAGACCTGGACATCCGACAT-GAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCG 4468340
Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAG---AA 16670
|| || || ||||| | | ||| | ||||| | ||| || | || |
Sbjct 4468339 AGGCCGCGAAGAACGCGAGCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCA 4468280
Query 16671 TATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730
| | |||||| | ||| | || | ||| || || || | |||||||| ||||
Sbjct 4468279 TCTCCCAATCGCGAACATCCTGCGACAGATCGACCTCCTCGGCAGTCCAAAATGAAGCCT 4468220
Query 16731 CTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776
| ||||| || ||||| | ||| || | |||||| || |||||
Sbjct 4468219 CGGCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGAAA 4468174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511336096062680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |