Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1104 141 1e-28 seq6695 120 4e-22 >seq1104 Length=4098138 Score = 141 bits (156), Expect = 1e-28 Identities = 394/593 (66%), Gaps = 15/593 (3%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||||||||| || || ||||||| || || ||||| || || || | | Sbjct 1191358 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAAT 1191417 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 || ||||||| || |||||||| ||||||||||| | |||| | | | || || ||||| Sbjct 1191418 CCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCG-CGCAGAAGCTGCCGGAGAAGAA 1191476 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC-CGGCG--CTGTCATG 24310 || ||||| || || ||||| || ||||| || | | | | | | | ||| Sbjct 1191477 GATCCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGACCCGTC--- 1191533 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| || ||||| | |||||||| || ||||| || ||||| || || Sbjct 1191534 GATCCATTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCG 1191593 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 ||| || | || | | || || || || | || || || | | ||||| ||||| Sbjct 1191594 AAAAAGGTGGTCTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACAT 1191653 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 |||||||| ||||| || || || || || || |||||||| | ||||| | | Sbjct 1191654 CTCCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGAC 1191713 Query 24491 CTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 ||| || || ||| || || || | || || ||| || ||||| ||| | Sbjct 1191714 CTGAACATC-GGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCGG 1191772 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG---TTTATTC 24605 |||| || || | ||||| | || || | |||| | | || | || || | | Sbjct 1191773 CAAAGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGT-TCAGGGTCTTCTCC 1191831 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 ||||| || ||| | || | ||| || || || | |||||||| || ||||| ||| Sbjct 1191832 CAATCTCGGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGCC 1191891 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 || || ||||| | |||||| | | || ||||||| || || ||| ||||| Sbjct 1191892 TTCTTGTACATCTCCCAGATCTGAGGAAATTGAATCGGGAACATACAGAATCT 1191944 >seq6695 Length=6602074 Score = 120 bits (132), Expect = 4e-22 Identities = 383/583 (66%), Gaps = 11/583 (2%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| |||||||||||||| || || ||||||| || |||||||| || || || | Sbjct 4468749 ACACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAA 4468690 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 24252 ||| ||||| | || |||||||| |||||||| || | |||| || || || |||| Sbjct 4468689 TCCCGGCATCAACCCCCGCTTTTTTAGCCAAAAAATCG-CGCAGAAACTGCCGGAGAAGA 4468631 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT- 24311 | || ||||| || || ||||| || ||||| || | || | | | | || Sbjct 4468630 AGATCCCTTCGACGCAGGCGAAGGCGATGAGTCTCTCGGC-GAAGCTTTG-AGACCCGTC 4468573 Query 24312 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| || ||||| | |||||||| || ||||| | ||||| || ||| Sbjct 4468572 GATCCATTTCATTGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACG 4468513 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 |||||| | || | | || || ||| || | || ||||| | | ||||| ||||| Sbjct 4468512 AAAGAGGTGGTCTCTCTCTTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACTGTACAT 4468453 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 ||||| || || || || || || || ||||| |||||||| | ||||| | | Sbjct 4468452 CTCCGAGTGGATATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGAC 4468393 Query 24491 CTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 ||| || || ||| || || || | || || ||| || ||||| ||| | Sbjct 4468392 CTGGACATC-CGACATGAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCCG 4468334 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTT--TATTCC 24606 | || ||||| | || || | || || | ||| | | || | | | | || Sbjct 4468333 CGAAGAACGCGAGCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCATCTCCC 4468274 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 |||| | ||| | || | ||| || || || | ||||||||||| ||||| |||| Sbjct 4468273 AATCGCGAACATCCTGCGACAGATCGACCTCCTCGGCAGTCCAAAATGAAGCCTCGGCCT 4468214 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 | || ||||| | |||||| | | ||||| || ||||| || Sbjct 4468213 TCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGAAACAT 4468171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593630693801520