Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq7521 84.2 2e-11 seq6695 84.2 2e-11 >seq7521 Length=6323785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || ||||| || || ||| ||| |||| | | Sbjct 4430934 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACGATCACCCTCGAGGTGGAAAGCTCC 4430875 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || ||| || |||||||| | || || ||| Sbjct 4430874 GACACCATTGACAATGTGAAGGCCAAGATTCAGGACAAAGAAGGAATCCCACCCGACCAA 4430815 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||| |||||||| || || || ||||||||| || || | || |||||||| Sbjct 4430814 CAAAGACTCATCTTTGCCGGGAAGCAGCTGGAAGATGGCAGGACCCTTGCTGATTACAAC 4430755 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || ||||||||||| || || ||| Sbjct 4430754 ATCCAGAAGGAATCCACCCTCCAC 4430731 >seq6695 Length=6602074 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || | || |||||||| || ||| ||| ||| | | Sbjct 810457 ATGCAGATCTTCGTCAAGACCCTTACCGGCAAAACAATCACCCTCGAGGTTGAAAGCTCT 810516 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||| || ||||| ||||| | || || ||| Sbjct 810517 GACACAATTGATAATGTCAAGGCAAAGATCCAGGATAAGGAAGGAATCCCTCCGGACCAA 810576 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||| |||||||| |||||||| ||||| ||| ||| | || || |||||| Sbjct 810577 CAGAGACTCATCTTTGCTGGCAAACAGCTGGAGGATGGACGAACCCTTGCTGACTACAAT 810636 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| || || ||| |||| Sbjct 810637 ATCCAGAAGGAATCCACCCTCCACCTGGT 810665 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || ||||| ||||||||||| |||||||| || || ||| | || ||||||| Sbjct 804755 GACCAGCAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGAC 804814 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || || |||||||| ||||| ||| |||| | || ||| |||| || Sbjct 804815 TACAACATCCAAAAGGAATCGACTCTCCACCTGGTTCTCCGGTTAAGAGGTGG 804867 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || ||||| ||||||||||| |||||||| || || ||| | || ||||||| Sbjct 809887 GACCAGCAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGAC 809946 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || || |||||||| ||||| ||| |||| | || ||| |||| || Sbjct 809947 TACAACATCCAAAAGGAATCGACTCTCCACCTGGTTCTCCGGTTAAGAGGTGG 809999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428272055994095