Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq6695 109 8e-19
seq5265 95.1 2e-14
seq7521 93.3 6e-14
seq7859 86.0 9e-12
>seq6695
Length=6602074
Score = 109 bits (120), Expect = 8e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||||||| | || || || || ||||| || || ||| | || ||||
Sbjct 804641 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 804700
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| || || || || || ||||| || || || || ||
Sbjct 804701 GACACCATTGACAATGTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 804760
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||||||||| ||||| || ||||| | |||||| | || || || | || || ||
Sbjct 804761 CAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAAC 804820
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| ||||| ||| | || ||||| | || ||| ||||||||||
Sbjct 804821 ATCCAAAAGGAATCGACTCTCCACCTGGTTCTCCGGTTAAGAGGTGGTAT 804870
Score = 109 bits (120), Expect = 8e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||||||| | || || || || ||||| || || ||| | || ||||
Sbjct 809773 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 809832
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| || || || || || ||||| || || || || ||
Sbjct 809833 GACACCATTGACAATGTCAAAGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAG 809892
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||||||||| ||||| || ||||| | |||||| | || || || | || || ||
Sbjct 809893 CAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAAC 809952
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| ||||| ||| | || ||||| | || ||| ||||||||||
Sbjct 809953 ATCCAAAAGGAATCGACTCTCCACCTGGTTCTCCGGTTAAGAGGTGGTAT 810002
Score = 104 bits (114), Expect = 4e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| || || | ||||| || || |||||||| || || | ||| |||| |||
Sbjct 810229 ATGCAGATCTTCGTGAAGACTCTTACCGGCAAAACGATCACCCTCGAGGTTGAGAGCTC- 810287
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| ||| || | || || || || || || ||||| || || || || ||
Sbjct 810288 TGATACCATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCA 810347
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||||||||||| ||||| || ||||| | ||||| | | || | | ||||| ||
Sbjct 810348 GCAAAGGCTTATCTTTGCTGGCAAACAGCTCGAGGACGGAAGGACCCTTGCTGATTACAA 810407
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||| || |||||||| ||| | |||||||| | ||| | || ||||||||
Sbjct 810408 TATCCAGAAAGAATCCACTCTCCATTTGGTCCTTCGTCTCCGTGGTGGTAT 810458
Score = 89.7 bits (98), Expect = 8e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||||||||| | ||||| || ||||| || || || ||| ||||| |||| |||
Sbjct 810913 ATGCAAATATTCGTCAAGACTCTCACAGGAAAGACCATCACTCTAGAGGTTGAGAGC-TC 810971
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| ||| ||| | || || || || || || ||||| || || || || ||
Sbjct 810972 GGATACCATTGACAATGTGAAGGCAAAGATACAGGACAAGGAAGGAATCCCTCCGGACCA 811031
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| || || || ||||| || || || | |||||| |||| || | | ||||| ||
Sbjct 811032 GCAGAGACTCATCTTTGCTGGGAAGCAGCTCGAGGATGGTCGGACCCTGGCTGATTACAA 811091
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || ||||| || | || ||||| | ||| | || ||||| ||
Sbjct 811092 CATCCAGAAGGAATCCACCCTCCACCTGGTTCTCCGTCTTCGTGGTGGAAT 811142
>seq5265
Length=2761455
Score = 95.1 bits (104), Expect = 2e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688
|| || || || || ||||||||||||||||| ||||| || ||||| || || ||| ||
Sbjct 1298954 CAGGACAAGGAGGGCATACCACCTGATCAACAGAGGCTGATATTTGCTGGTAAGCAACTA 1298895
Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748
|| ||| | ||||| ||| ||| || |||||||| ||||| || ||| | ||| | ||
Sbjct 1298894 GAAGATGGACGAACCCTAGCAGACTACAATATTCAGAAAGAGTCTACTCTCCATCTAGTG 1298835
Query 124749 TT 124750
||
Sbjct 1298834 TT 1298833
>seq7521
Length=6323785
Score = 93.3 bits (102), Expect = 6e-14
Identities = 163/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||| ||| | || ||||| || || || || || || | || | || |||
Sbjct 4431162 ATGCAAATCTTTGTGAAAACACTCACCGGAAAGACCATCACCCTTGAAGTCGAGAGCTCG 4431103
Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
|| || ||| ||| |||| || ||||| || || || ||||| || || || || |
Sbjct 4431102 -GACACCATTGACAATGTTAAGGCA-AAAATCCAGGACAAGGAAGGAATTCCTCCGGACC 4431045
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| ||||||||||| ||||| |||||||| | || ||| | || || || | || || |
Sbjct 4431044 AGCAAAGGCTTATCTTTGCCGGAAAACAGCTCGAAGATGGCCGCACCTTGGCCGACTACA 4430985
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
| || ||||| || ||||| | || ||||| | || || ||||||||||
Sbjct 4430984 ACATCCAAAAGGAGTCAACCCTCCACCTGGTTCTCCGGTTGAGAGGTGGTAT 4430933
>seq7859
Length=784361
Score = 86.0 bits (94), Expect = 9e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688
|| || || || || ||||||||||||||||||||||| || ||||| || || || ||
Sbjct 400180 CAGGACAAGGAGGGCATACCACCTGATCAACAAAGGCTGATATTTGCTGGGAAGCAGCTA 400239
Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748
|| ||| | ||||| ||| ||| || || || || ||||| || ||| | || ||||
Sbjct 400240 GAAGATGGACGAACCCTAGCAGACTACAACATCCAGAAAGAGTCCACTCTCCACCTGGTC 400299
Query 124749 TT 124750
||
Sbjct 400300 TT 400301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755340330243200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |