Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq6695 109 8e-19 seq5265 95.1 2e-14 seq7521 93.3 6e-14 seq7859 86.0 9e-12 >seq6695 Length=6602074 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || || || ||||| || || ||| | || |||| Sbjct 804641 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 804700 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || || || || ||||| || || || || || Sbjct 804701 GACACCATTGACAATGTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 804760 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| ||||| || ||||| | |||||| | || || || | || || || Sbjct 804761 CAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAAC 804820 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||| | || ||||| | || ||| |||||||||| Sbjct 804821 ATCCAAAAGGAATCGACTCTCCACCTGGTTCTCCGGTTAAGAGGTGGTAT 804870 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || || || ||||| || || ||| | || |||| Sbjct 809773 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 809832 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || || || || ||||| || || || || || Sbjct 809833 GACACCATTGACAATGTCAAAGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAG 809892 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| ||||| || ||||| | |||||| | || || || | || || || Sbjct 809893 CAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAAC 809952 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||| | || ||||| | || ||| |||||||||| Sbjct 809953 ATCCAAAAGGAATCGACTCTCCACCTGGTTCTCCGGTTAAGAGGTGGTAT 810002 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| || || |||||||| || || | ||| |||| ||| Sbjct 810229 ATGCAGATCTTCGTGAAGACTCTTACCGGCAAAACGATCACCCTCGAGGTTGAGAGCTC- 810287 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| || | || || || || || || ||||| || || || || || Sbjct 810288 TGATACCATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCA 810347 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| || ||||| | ||||| | | || | | ||||| || Sbjct 810348 GCAAAGGCTTATCTTTGCTGGCAAACAGCTCGAGGACGGAAGGACCCTTGCTGATTACAA 810407 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || |||||||| ||| | |||||||| | ||| | || |||||||| Sbjct 810408 TATCCAGAAAGAATCCACTCTCCATTTGGTCCTTCGTCTCCGTGGTGGTAT 810458 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||||||||| | ||||| || ||||| || || || ||| ||||| |||| ||| Sbjct 810913 ATGCAAATATTCGTCAAGACTCTCACAGGAAAGACCATCACTCTAGAGGTTGAGAGC-TC 810971 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || || || || || || ||||| || || || || || Sbjct 810972 GGATACCATTGACAATGTGAAGGCAAAGATACAGGACAAGGAAGGAATCCCTCCGGACCA 811031 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || || || ||||| || || || | |||||| |||| || | | ||||| || Sbjct 811032 GCAGAGACTCATCTTTGCTGGGAAGCAGCTCGAGGATGGTCGGACCCTGGCTGATTACAA 811091 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | || ||||| | ||| | || ||||| || Sbjct 811092 CATCCAGAAGGAATCCACCCTCCACCTGGTTCTCCGTCTTCGTGGTGGAAT 811142 >seq5265 Length=2761455 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || || || ||||||||||||||||| ||||| || ||||| || || ||| || Sbjct 1298954 CAGGACAAGGAGGGCATACCACCTGATCAACAGAGGCTGATATTTGCTGGTAAGCAACTA 1298895 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| | ||||| ||| ||| || |||||||| ||||| || ||| | ||| | || Sbjct 1298894 GAAGATGGACGAACCCTAGCAGACTACAATATTCAGAAAGAGTCTACTCTCCATCTAGTG 1298835 Query 124749 TT 124750 || Sbjct 1298834 TT 1298833 >seq7521 Length=6323785 Score = 93.3 bits (102), Expect = 6e-14 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || ||||| || || || || || || | || | || ||| Sbjct 4431162 ATGCAAATCTTTGTGAAAACACTCACCGGAAAGACCATCACCCTTGAAGTCGAGAGCTCG 4431103 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| ||| |||| || ||||| || || || ||||| || || || || | Sbjct 4431102 -GACACCATTGACAATGTTAAGGCA-AAAATCCAGGACAAGGAAGGAATTCCTCCGGACC 4431045 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||||||||| ||||| |||||||| | || ||| | || || || | || || | Sbjct 4431044 AGCAAAGGCTTATCTTTGCCGGAAAACAGCTCGAAGATGGCCGCACCTTGGCCGACTACA 4430985 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| || ||||| | || ||||| | || || |||||||||| Sbjct 4430984 ACATCCAAAAGGAGTCAACCCTCCACCTGGTTCTCCGGTTGAGAGGTGGTAT 4430933 >seq7859 Length=784361 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || || || ||||||||||||||||||||||| || ||||| || || || || Sbjct 400180 CAGGACAAGGAGGGCATACCACCTGATCAACAAAGGCTGATATTTGCTGGGAAGCAGCTA 400239 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| | ||||| ||| ||| || || || || ||||| || ||| | || |||| Sbjct 400240 GAAGATGGACGAACCCTAGCAGACTACAACATCCAGAAAGAGTCCACTCTCCACCTGGTC 400299 Query 124749 TT 124750 || Sbjct 400300 TT 400301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755340330243200