Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3309 98.7 2e-15 seq6695 91.5 3e-13 seq6747 84.2 5e-11 seq1104 84.2 5e-11 >seq3309 Length=3363706 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| ||||| |||| ||||| || ||||| || |||| ||| || ||||| ||| | Sbjct 2884335 GATTTCGAGTATGATTACTTTGGATTTAAAACACTTGAGAGATCCTACCTCCTGAAAGTC 2884276 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | || ||| | ||| |||||||||||| | || ||||| || || ||| Sbjct 2884275 CAAGGAAAGGTTGTTGAAAGGCCTCAACACATGTTGATGAGGGTTGCTGTTGGCATCCAC 2884216 Query 248929 AAGGATGACATAGA 248942 ||||||||||| || Sbjct 2884215 AAGGATGACATTGA 2884202 >seq6695 Length=6602074 Score = 91.5 bits (100), Expect = 3e-13 Identities = 109/145 (75%), Gaps = 10/145 (7%) Strand=Plus/Minus Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318 |||||| | || | ||||| || ||||||||||| ||||| || || |||| |||||| Sbjct 4469033 TACTCGCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGTAGCGATATCAGCTCCATC 4468974 Query 157319 CACTCGAATGG-GTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 || || ||||| ||||| || ||||||||| ||||||| ||| || |||| | Sbjct 4468973 CAATCAAATGGATTTGGCACA-CCGTACACCTTACCGTACCCAAGC----GCACCCAGCA 4468919 Query 157378 G----TCCGCCACAAACTTGATGTA 157398 | ||||||||||||| |||||| Sbjct 4468918 GCCGATCCGCCACAAACTCGATGTA 4468894 >seq6747 Length=1176643 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || || || | ||||| || ||||| || |||| ||| || ||||| ||| | Sbjct 664901 GATTTTGAATATGACTACTTTGGATTTAAAACACTTGAGAGATCCTACCTCCTTAAAGTC 664960 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | || ||| | ||| |||||| ||||| |||| ||||| || || ||| Sbjct 664961 CAAGGAAAGGTTGTTGAAAGGCCTCAACACATGCTGATGAGAGTTGCTGTAGGCATCCAC 665020 Query 248929 AAGGATGACATAGA 248942 |||||||| || || Sbjct 665021 AAGGATGATATCGA 665034 >seq1104 Length=4098138 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| | || || ||||| |||||||||||||| ||||| || || |||| ||||| Sbjct 1191072 GTACTCTCCAACCCTCTTCTCGAAAAAGTTGGTCTTCCCCTGCAGCGAGATCAGTTCCAT 1191131 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| || ||||| || | |||||||||| || |||| ||| |||| | Sbjct 1191132 CCAATCAAATGGATTCGTTACACCGTACACCTTGCCGCACCCGAGCGCACCCAGCAACCG 1191191 Query 157378 GTCCGCCACAAACTTGATGTA 157398 |||||||| |||| |||||| Sbjct 1191192 ATCCGCCACGAACTCGATGTA 1191212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073597882765632