Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq7521 116 3e-21 seq6695 98.7 8e-16 >seq7521 Length=6323785 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || ||||| |||||||||||||||| || | |||| Sbjct 4430951 AGAACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCT 4431010 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || ||| ||||||| ||||| || ||| || | |||||||| || Sbjct 4431011 TCGAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGAATTCCTTCCTTGTCC 4431070 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| | ||| || | ||| ||||| | |||| ||||| ||||||| | Sbjct 4431071 TGGATTTTTGCCTTAACATTGTCAATGGTGTCCGAGCTCTCGACTTCAAGGGTGATGGTC 4431130 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| | |||||| ||||| |||||||| Sbjct 4431131 TTTCCGGTGAGTGTTTTCACAAAGATTTGCAT 4431162 >seq6695 Length=6602074 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| ||||| |||||||||||||||| || | ||| Sbjct 804852 AGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCC 804793 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||||| ||| ||||||| ||||| || ||| || | |||||||| || Sbjct 804792 TCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCC 804733 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||| ||||| | ||| ||||| ||| ||| | |||||| | Sbjct 804732 TGGATCT-TTGCTTTGACATTGTCAATGGTGTCCGAACTCTCAACTTCGAGAGTGATGGT 804674 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| | ||||| ||||| |||||||| Sbjct 804673 CTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 804641 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| ||||| |||||||||||||||| || | ||| Sbjct 809984 AGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCC 809925 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||||| ||| ||||||| ||||| || ||| || | |||||||| || Sbjct 809924 TCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGAATTCCTTCCTTGTCC 809865 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||| ||||| | ||| ||||| ||| ||| | |||||| | Sbjct 809864 TGGATCT-TTGCTTTGACATTGTCAATGGTGTCCGAACTCTCAACTTCGAGAGTGATGGT 809806 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| | ||||| ||||| |||||||| Sbjct 809805 CTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 809773 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || || |||||||| || | ||| | ||| Sbjct 810668 AGAACCAGGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCAGCAAGGGTTCGTCCATCC 810609 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||||| ||| |||| ||||| ||||| ||| || | ||||||||||| Sbjct 810608 TCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGGATTCCTTCCTTATCC 810549 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| |||||| | || || | |||||| || Sbjct 810548 TGGATCTTTGCCTTGACATTATCAATTGTGTCAGAGCTTTCAACCTCGAGGGTGATTGTT 810489 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| | || || || || || ||||| Sbjct 810488 TTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 810457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379287369749505