Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1104 159 4e-34 seq6695 141 1e-28 >seq1104 Length=4098138 Score = 159 bits (176), Expect = 4e-34 Identities = 398/593 (67%), Gaps = 15/593 (3%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || |||||||||||||| || || ||||||| || || ||||| || || || | | Sbjct 1191358 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAAT 1191417 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||||| || |||||||| ||||||||||| | ||| ||||| |||||| Sbjct 1191418 CCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAG 1191477 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCG--CTGTCATG 33757 || ||||| || ||| || ||||| || |||||||| | | | | | | | ||| Sbjct 1191478 ATCCCTTCAAC-GCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGACCCGTC--- 1191533 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| || ||||| | |||||||| || ||||| || || || ||||| Sbjct 1191534 GATCCATTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCG 1191593 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||| || | || | | || || || || | || || |||| | ||||| ||||| Sbjct 1191594 AAAAAGGTGGTCTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACAT 1191653 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 |||||||| ||||| || || || ||||| || |||||||| | ||||| | | Sbjct 1191654 CTCCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGAC 1191713 Query 33938 CTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 ||| || || | ||| || || || | || || ||| || || || ||| | Sbjct 1191714 CTGAACATC-GGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCGG 1191772 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG---TTTATTC 34052 |||| || || | ||||| | || || | |||| | | || | || || | | Sbjct 1191773 CAAAGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGT-TCAGGGTCTTCTCC 1191831 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 ||||| || ||| | || | ||| || || || | |||||||| || ||||| ||| Sbjct 1191832 CAATCTCGGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGCC 1191891 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 34165 || || ||||| | |||||| | | || |||| || ||||| ||| ||||| Sbjct 1191892 TTCTTGTACATCTCCCAGATCTGAGGAAATTGAATCGGGAACATACAGAATCT 1191944 >seq6695 Length=6602074 Score = 141 bits (156), Expect = 1e-28 Identities = 388/583 (67%), Gaps = 11/583 (2%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| |||||||||||||| || || ||||||| || |||||||| || || || | Sbjct 4468749 ACACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAA 4468690 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 ||| ||||| | || |||||||| |||||||| || | ||| ||||| ||||| Sbjct 4468689 TCCCGGCATCAACCCCCGCTTTTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAA 4468630 Query 33701 GATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT- 33758 ||| ||||| || ||| || ||||| || |||||||| | || | | | | || Sbjct 4468629 GATCCCTTCGAC-GCAGGCGAAGGCGATGAGTCTCTCGGC-GAAGCTTTG-AGACCCGTC 4468573 Query 33759 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| || ||||| | |||||||| || ||||| | || || |||||| Sbjct 4468572 GATCCATTTCATTGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACG 4468513 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 |||||| | || | | || || ||| || | || ||||||| | ||||| ||||| Sbjct 4468512 AAAGAGGTGGTCTCTCTCTTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACTGTACAT 4468453 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||||| || || || || || || |||||||| |||||||| | ||||| | | Sbjct 4468452 CTCCGAGTGGATATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGAC 4468393 Query 33938 CTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 ||| || || | ||| || || || | || || ||| || || || ||| | Sbjct 4468392 CTGGACATCCG-ACATGAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCCG 4468334 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTT--TATTCC 34053 | || ||||| | || || | || || | ||| | | || | | | | || Sbjct 4468333 CGAAGAACGCGAGCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCATCTCCC 4468274 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 |||| | ||| | || | ||| || || || | ||||||||||| ||||| |||| Sbjct 4468273 AATCGCGAACATCCTGCGACAGATCGACCTCCTCGGCAGTCCAAAATGAAGCCTCGGCCT 4468214 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 | || ||||| | |||||| | | |||||||| || || || Sbjct 4468213 TCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGAAACAT 4468171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629721167052720