Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1104 145 1e-29 seq6695 132 6e-26 >seq1104 Length=4098138 Score = 145 bits (160), Expect = 1e-29 Identities = 393/593 (66%), Gaps = 15/593 (3%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || |||||||||||||| || || ||||||| || || ||||| || || || | | Sbjct 1191358 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAAT 1191417 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 || ||||||| || |||||||| ||||||||||| | |||| | | | || || ||||| Sbjct 1191418 CCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCG-CGCAGAAGCTGCCGGAGAAGAA 1191476 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG----TCAT 36332 || ||||| || || ||||| || |||||||| | | || ||| | | Sbjct 1191477 GATCCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAA----GCTCTGAGACCCGT 1191532 Query 36333 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 36392 ||||| || ||||| | |||||||| || ||||| || ||||| || || Sbjct 1191533 CGATCCATTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGC 1191592 Query 36393 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 36452 ||| || | || | | || || || || | || || || | | ||||| |||| Sbjct 1191593 GAAAAAGGTGGTCTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACA 1191652 Query 36453 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 36512 | |||||||| ||||| || || || || || || |||||||| | ||||| | | Sbjct 1191653 TCTCCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGA 1191712 Query 36513 TCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 36571 ||| || || | ||| || || || | || || ||| || ||||| ||| Sbjct 1191713 CCTGAACATC-GGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCG 1191771 Query 36572 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG--TTTGGTGTTAGT-TTATTC 36628 ||||| || || | ||||| | || || | |||| | | | || || | | Sbjct 1191772 GCAAAGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGTTCAGGGTCTTCTCC 1191831 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 ||||| || ||| | || | ||| || || || | |||||||| || ||||| ||| Sbjct 1191832 CAATCTCGGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGCC 1191891 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 || || ||||| | |||||| | | || ||||||| || || ||| ||||| Sbjct 1191892 TTCTTGTACATCTCCCAGATCTGAGGAAATTGAATCGGGAACATACAGAATCT 1191944 >seq6695 Length=6602074 Score = 132 bits (146), Expect = 6e-26 Identities = 384/584 (66%), Gaps = 13/584 (2%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| |||||||||||||| || || ||||||| || |||||||| || || || | Sbjct 4468749 ACACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAA 4468690 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 36275 ||| ||||| | || |||||||| |||||||| || | |||| || || || |||| Sbjct 4468689 TCCCGGCATCAACCCCCGCTTTTTTAGCCAAAAAATCG-CGCAGAAACTGCCGGAGAAGA 4468631 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 36335 | || ||||| || || ||||| || |||||||| | | | | | | | Sbjct 4468630 AGATCCCTTCGACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGACCCGTCGA 4468571 Query 36336 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 36395 |||| || ||||| | |||||||| || ||||| | ||||| || ||| || Sbjct 4468570 TCCATTTCATTGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACGAA 4468511 Query 36396 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 36455 |||| | || | | || || ||| || | || ||||| | | ||||| ||||| | Sbjct 4468510 AGAGGTGGTCTCTCTCTTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACTGTACATCT 4468451 Query 36456 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 36515 |||| || || || || || || || ||||| |||||||| | ||||| | | || Sbjct 4468450 CCGAGTGGATATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGACCT 4468391 Query 36516 GTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 36574 | || || | ||| || || || | || || ||| || ||||| ||| || Sbjct 4468390 GGACATCCG-ACATGAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCCGCG 4468332 Query 36575 AAAAACGCCAATACATGTTTTATAAAAT---ATT---TTTCGTTTGGTGTTAGTTTATTC 36628 || ||||| | || || | || || | || ||||| | || | | | | Sbjct 4468331 AAGAACGCGAGCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCA---TCTCC 4468275 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 ||||| | ||| | || | ||| || || || | ||||||||||| ||||| ||| Sbjct 4468274 CAATCGCGAACATCCTGCGACAGATCGACCTCCTCGGCAGTCCAAAATGAAGCCTCGGCC 4468215 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 || || ||||| | |||||| | | ||||| || ||||| || Sbjct 4468214 TTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGAAACAT 4468171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658072025517160