Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq5186 113 4e-20
seq7521 107 2e-18
seq6695 95.1 1e-14
seq1 91.5 1e-13
>seq5186
Length=9353477
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||||| || | || | ||| ||||| || || || || ||||| |
Sbjct 4547135 CCTCCACGGAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCAGCC 4547076
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||| ||| ||||| |||||||| || || ||||||| | |||||||| || ||
Sbjct 4547075 AGTGTCCTCCCATCTTCCAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGGGGA 4547016
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||| ||||| ||| || ||| | | || | ||||||| | |||||||
Sbjct 4547015 ATCCCTTCCTTGTCCTGGATCTTGGTTTTGACATTCTCGATCGTGTCGGAGCTCTCCACC 4546956
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | |||||||||||| | ||||| ||||| ||||||||
Sbjct 4546955 TCCAGAGTGATCGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4546909
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| ||||| | ||||||||||| || ||||| || ||| |
Sbjct 7866028 CCACCACGCAGACGGAGAACCAAGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGCC 7866087
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| || | || || ||||| || || || | ||||| | |||||| || || ||
Sbjct 7866088 AGGGTGCGTCCA-TCCTCCAGCTGCTTCCCGGCGAAAATCAGCCTTTGCTGGTCCGGGGG 7866146
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| || || ||||| ||| || |||| | || | ||||||| | ||||||
Sbjct 7866147 AATACCCTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCCAC 7866206
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | ||||| ||||| | || || ||||| || |||||
Sbjct 7866207 CTCGAGGGTAATAGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 7866254
>seq7521
Length=6323785
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| || || | ||| | ||| | || ||||| ||||| ||||| || ||| |
Sbjct 4430936 CCACCTCTCAACCGGAGAACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCC 4430995
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| |||||||||||||| || ||| |||| || | |||||| || |||||
Sbjct 4430996 AAGGTGCGGCCATCTTCGAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGA 4431055
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||| ||||| ||||||| || | | || | ||||| | | ||| ||
Sbjct 4431056 ATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTGTCAATGGTGTCCGAGCTCTCGACT 4431115
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| ||| | ||||| ||||| | ||||| || || ||||||||
Sbjct 4431116 TCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACAAAGATTTGCAT 4431162
>seq6695
Length=6602074
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| ||| || | ||| | ||| | || || || ||||| ||||| || ||| |
Sbjct 804867 CCACCTCTTAACCGGAGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCC 804808
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| || || |||||||| || ||| |||| || | |||||| || |||||
Sbjct 804807 AAGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGG 804748
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||| ||||| ||| ||| ||| | | || | ||||| | ||| ||
Sbjct 804747 ATTCCTTCCTTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCCGAACTCTCAACT 804688
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | ||||||||||| | ||||| || |||||||||||
Sbjct 804687 TCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 804641
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| || || | ||| | ||| | || || || ||||| ||||| || ||
Sbjct 805095 CCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCA 805036
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || ||||||||||| ||||||||| |||| || | || || || |||||
Sbjct 805035 AGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGG 804976
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||||||||| ||| | |||| |||| | || | ||||||| | || ||
Sbjct 804975 ATTCCTTCTTTGTC-TTGAATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAAC 804917
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||| | ||| | ||| || ||||| | || |||||||| || ||||||
Sbjct 804916 CTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCATA 804868
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| ||| || | ||| | ||| | || || || ||||| ||||| || ||| |
Sbjct 809999 CCACCTCTTAACCGGAGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCC 809940
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| || || |||||||| || ||| |||| || | |||||| || |||||
Sbjct 809939 AAGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGA 809880
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||| ||||| ||| ||| ||| | | || | ||||| | ||| ||
Sbjct 809879 ATTCCTTCCTTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCCGAACTCTCAACT 809820
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | ||||||||||| | ||||| || |||||||||||
Sbjct 809819 TCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 809773
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| || || | ||| | ||| | || || || ||||| ||||| || ||
Sbjct 810227 CCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCA 810168
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || ||||||||||| ||||||||| |||| || | || || || |||||
Sbjct 810167 AGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGG 810108
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||||||||| ||| | |||| |||| | || | ||||||| | || ||
Sbjct 810107 ATTCCTTCTTTGTC-TTGAATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAAC 810049
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||| | ||| | ||| || ||||| | || |||||||| || ||||||
Sbjct 810048 CTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCATA 810000
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || ||||| || || || ||||| | || || ||| ||||||||||| |||
Sbjct 810425 GTGGATTCTTTCTGGATATTGTAATCAGCAAGGGTCCTTCCGTCCTCGAGCTGTTTGCCA 810366
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | |||||| || ||||| || ||||| ||||| ||| ||| ||
Sbjct 810365 GCAAAGATAAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTC 810306
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | || || | | ||| ||||| | ||| | ||| |||||||| | ||
Sbjct 810305 ACGTTGTCAATGGTATCAGAGCTCTCAACCTCGAGGGTGATCGTTTTGCCGGTAAGAGTC 810246
Query 139748 TTTACGAATATTTGCATA 139765
|| ||||| || ||||||
Sbjct 810245 TTCACGAAGATCTGCATA 810228
>seq1
Length=11827220
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| | ||| | || ||||||| |||||||| || || ||||| || || |
Sbjct 5218648 CCACCTCGCAGACGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 5218707
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| || || ||||| ||||| ||| ||||||| | ||||| || || ||
Sbjct 5218708 AGGGTGCGGCCATCCTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGG 5218767
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || || | | || | ||||| | | ||| |||
Sbjct 5218768 ATCCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAGCTCTCGACC 5218827
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | ||| | ||||||||||||| || || || ||||| ||||||
Sbjct 5218828 TCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACAAATATCTGCATA 5218875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495988046400800
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