Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5186 113 4e-20 seq7521 107 2e-18 seq6695 95.1 1e-14 seq1 91.5 1e-13 >seq5186 Length=9353477 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | || | ||| ||||| || || || || ||||| | Sbjct 4547135 CCTCCACGGAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCAGCC 4547076 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| ||| ||||| |||||||| || || ||||||| | |||||||| || || Sbjct 4547075 AGTGTCCTCCCATCTTCCAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGGGGA 4547016 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || ||| | | || | ||||||| | ||||||| Sbjct 4547015 ATCCCTTCCTTGTCCTGGATCTTGGTTTTGACATTCTCGATCGTGTCGGAGCTCTCCACC 4546956 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||||||| | ||||| ||||| |||||||| Sbjct 4546955 TCCAGAGTGATCGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4546909 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | ||||||||||| || ||||| || ||| | Sbjct 7866028 CCACCACGCAGACGGAGAACCAAGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGCC 7866087 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || || ||||| || || || | ||||| | |||||| || || || Sbjct 7866088 AGGGTGCGTCCA-TCCTCCAGCTGCTTCCCGGCGAAAATCAGCCTTTGCTGGTCCGGGGG 7866146 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || |||| | || | ||||||| | |||||| Sbjct 7866147 AATACCCTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCCAC 7866206 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| ||||| | || || ||||| || ||||| Sbjct 7866207 CTCGAGGGTAATAGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 7866254 >seq7521 Length=6323785 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || || | ||| | ||| | || ||||| ||||| ||||| || ||| | Sbjct 4430936 CCACCTCTCAACCGGAGAACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCC 4430995 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||||||||| || ||| |||| || | |||||| || ||||| Sbjct 4430996 AAGGTGCGGCCATCTTCGAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGA 4431055 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||||||| || | | || | ||||| | | ||| || Sbjct 4431056 ATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTGTCAATGGTGTCCGAGCTCTCGACT 4431115 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| ||||| | ||||| || || |||||||| Sbjct 4431116 TCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACAAAGATTTGCAT 4431162 >seq6695 Length=6602074 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| || | ||| | ||| | || || || ||||| ||||| || ||| | Sbjct 804867 CCACCTCTTAACCGGAGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCC 804808 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || |||||||| || ||| |||| || | |||||| || ||||| Sbjct 804807 AAGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGG 804748 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||| ||| | | || | ||||| | ||| || Sbjct 804747 ATTCCTTCCTTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCCGAACTCTCAACT 804688 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||| | ||||| || ||||||||||| Sbjct 804687 TCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 804641 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || || | ||| | ||| | || || || ||||| ||||| || || Sbjct 805095 CCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCA 805036 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||||||||| ||||||||| |||| || | || || || ||||| Sbjct 805035 AGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGG 804976 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | |||| |||| | || | ||||||| | || || Sbjct 804975 ATTCCTTCTTTGTC-TTGAATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAAC 804917 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | ||| || ||||| | || |||||||| || |||||| Sbjct 804916 CTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCATA 804868 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| || | ||| | ||| | || || || ||||| ||||| || ||| | Sbjct 809999 CCACCTCTTAACCGGAGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCC 809940 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || |||||||| || ||| |||| || | |||||| || ||||| Sbjct 809939 AAGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGA 809880 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||| ||| | | || | ||||| | ||| || Sbjct 809879 ATTCCTTCCTTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCCGAACTCTCAACT 809820 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||| | ||||| || ||||||||||| Sbjct 809819 TCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 809773 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || || | ||| | ||| | || || || ||||| ||||| || || Sbjct 810227 CCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCA 810168 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||||||||| ||||||||| |||| || | || || || ||||| Sbjct 810167 AGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGG 810108 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | |||| |||| | || | ||||||| | || || Sbjct 810107 ATTCCTTCTTTGTC-TTGAATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAAC 810049 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | ||| || ||||| | || |||||||| || |||||| Sbjct 810048 CTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCATA 810000 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || ||||| || || || ||||| | || || ||| ||||||||||| ||| Sbjct 810425 GTGGATTCTTTCTGGATATTGTAATCAGCAAGGGTCCTTCCGTCCTCGAGCTGTTTGCCA 810366 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | |||||| || ||||| || ||||| ||||| ||| ||| || Sbjct 810365 GCAAAGATAAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTC 810306 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | | ||| ||||| | ||| | ||| |||||||| | || Sbjct 810305 ACGTTGTCAATGGTATCAGAGCTCTCAACCTCGAGGGTGATCGTTTTGCCGGTAAGAGTC 810246 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 810245 TTCACGAAGATCTGCATA 810228 >seq1 Length=11827220 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || ||||||| |||||||| || || ||||| || || | Sbjct 5218648 CCACCTCGCAGACGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 5218707 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| ||||| ||| ||||||| | ||||| || || || Sbjct 5218708 AGGGTGCGGCCATCCTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGG 5218767 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 5218768 ATCCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAGCTCTCGACC 5218827 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||||||||||| || || || ||||| |||||| Sbjct 5218828 TCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACAAATATCTGCATA 5218875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495988046400800