Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1104 161 1e-34
seq6695 152 7e-32
>seq1104
Length=4098138
Score = 161 bits (178), Expect = 1e-34
Identities = 412/619 (67%), Gaps = 11/619 (2%)
Strand=Plus/Plus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| |||||||||||||| || || ||||||| || | ||||| || || || | |
Sbjct 1191358 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAAT 1191417
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078
|| ||||||| || |||||||| ||||||||||| | |||| || || || |||||
Sbjct 1191418 CCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCG-CGCAGAAGCTGCCGGAGAAGAA 1191476
Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT-- 50136
||| ||||| || ||| ||||| | |||||||| | | || | | | ||
Sbjct 1191477 GATCCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCT--CTGAGACCCGTCG 1191534
Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196
||||| || ||||| | |||||||| || ||||| || || || ||||| |
Sbjct 1191535 ATCCATTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCGA 1191594
Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256
|| || | || | | || || || || | || || |||| | ||||| |||||
Sbjct 1191595 AAAAGGTGGTCTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACATC 1191654
Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316
|||||||| ||||| || || || ||||| || |||||||| | ||||| | | |
Sbjct 1191655 TCCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGACC 1191714
Query 50317 TGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375
|| || || | ||| || || ||| | || || ||| || ||||| ||| ||
Sbjct 1191715 TGAACATC-GGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCGGC 1191773
Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATTCCA 50432
||| || || | ||||| | || || || |||| | | || || | |||
Sbjct 1191774 AAAGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGTTCAGGGTCTTCTCCCA 1191833
Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492
||| || ||| | || | ||| || || || | |||||||| || ||||| |||||
Sbjct 1191834 ATCTCGGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGCCTT 1191893
Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552
|| ||||| | |||||| | | || |||| || ||||| ||| ||||| | || |
Sbjct 1191894 CTTGTACATCTCCCAGATCTGAGGAAATTGAATCGGGAACATACAGAATCTGTCAGGCGT 1191953
Query 50553 TGGTGCAAGGATCGGTTCC 50571
|| | |||| ||| |||
Sbjct 1191954 CGGCGTCAGGAGCGGCTCC 1191972
>seq6695
Length=6602074
Score = 152 bits (168), Expect = 7e-32
Identities = 391/587 (67%), Gaps = 19/587 (3%)
Strand=Plus/Minus
Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018
||| |||||||||||||| || || ||||||| || | |||||| || || || |
Sbjct 4468749 ACACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAA 4468690
Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077
||| ||||| | || |||||||| |||||||| || | |||| || || || ||||
Sbjct 4468689 TCCCGGCATCAACCCCCGCTTTTTTAGCCAAAAAATCG-CGCAGAAACTGCCGGAGAAGA 4468631
Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCGCTGTCAT 50134
|||| ||||| || ||| ||||| | |||||||| | | || | | |||
Sbjct 4468630 AGATCCCTTCGACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGACCCGTC-- 4468573
Query 50135 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194
||||| || ||||| | |||||||| || ||||| | || || ||||||
Sbjct 4468572 -GATCCATTTCATTGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCAC 4468514
Query 50195 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254
|||||| | || | | || || ||| || | || ||||||| | ||||| ||||
Sbjct 4468513 GAAAGAGGTGGTCTCTCTCTTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACTGTACA 4468454
Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314
| ||||| || || || || || || |||||||| |||||||| | ||||| | |
Sbjct 4468453 TCTCCGAGTGGATATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGA 4468394
Query 50315 TCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373
||| || || | ||| || || ||| | || || ||| || ||||| |||
Sbjct 4468393 CCTGGACATCCG-ACATGAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCC 4468335
Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAAT---GTT---TTTCGTTGGGTGTTAGTTTA 50427
|| || ||||| | || || | || || | ||| ||||| | || | |
Sbjct 4468334 GCGAAGAACGCGAGCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCA---TC 4468278
Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487
| |||||| | ||| | || | ||| || || || | ||||||||||| |||||
Sbjct 4468277 TCCCAATCGCGAACATCCTGCGACAGATCGACCTCCTCGGCAGTCCAAAATGAAGCCTCG 4468218
Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534
||||| || ||||| | |||||| | | |||||||| || || ||
Sbjct 4468217 GCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGAAACAT 4468171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718158824068360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |