Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1104 161 1e-34 seq6695 152 7e-32 >seq1104 Length=4098138 Score = 161 bits (178), Expect = 1e-34 Identities = 412/619 (67%), Gaps = 11/619 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || |||||||||||||| || || ||||||| || | ||||| || || || | | Sbjct 1191358 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAAT 1191417 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||||| || |||||||| ||||||||||| | |||| || || || ||||| Sbjct 1191418 CCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCG-CGCAGAAGCTGCCGGAGAAGAA 1191476 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT-- 50136 ||| ||||| || ||| ||||| | |||||||| | | || | | | || Sbjct 1191477 GATCCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCT--CTGAGACCCGTCG 1191534 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| || ||||| | |||||||| || ||||| || || || ||||| | Sbjct 1191535 ATCCATTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCGA 1191594 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 || || | || | | || || || || | || || |||| | ||||| ||||| Sbjct 1191595 AAAAGGTGGTCTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACATC 1191654 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 |||||||| ||||| || || || ||||| || |||||||| | ||||| | | | Sbjct 1191655 TCCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGACC 1191714 Query 50317 TGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 || || || | ||| || || ||| | || || ||| || ||||| ||| || Sbjct 1191715 TGAACATC-GGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCGGC 1191773 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATTCCA 50432 ||| || || | ||||| | || || || |||| | | || || | ||| Sbjct 1191774 AAAGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGTTCAGGGTCTTCTCCCA 1191833 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 ||| || ||| | || | ||| || || || | |||||||| || ||||| ||||| Sbjct 1191834 ATCTCGGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGCCTT 1191893 Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || ||||| | |||||| | | || |||| || ||||| ||| ||||| | || | Sbjct 1191894 CTTGTACATCTCCCAGATCTGAGGAAATTGAATCGGGAACATACAGAATCTGTCAGGCGT 1191953 Query 50553 TGGTGCAAGGATCGGTTCC 50571 || | |||| ||| ||| Sbjct 1191954 CGGCGTCAGGAGCGGCTCC 1191972 >seq6695 Length=6602074 Score = 152 bits (168), Expect = 7e-32 Identities = 391/587 (67%), Gaps = 19/587 (3%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| |||||||||||||| || || ||||||| || | |||||| || || || | Sbjct 4468749 ACACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAA 4468690 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077 ||| ||||| | || |||||||| |||||||| || | |||| || || || |||| Sbjct 4468689 TCCCGGCATCAACCCCCGCTTTTTTAGCCAAAAAATCG-CGCAGAAACTGCCGGAGAAGA 4468631 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCGCTGTCAT 50134 |||| ||||| || ||| ||||| | |||||||| | | || | | ||| Sbjct 4468630 AGATCCCTTCGACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGACCCGTC-- 4468573 Query 50135 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||| || ||||| | |||||||| || ||||| | || || |||||| Sbjct 4468572 -GATCCATTTCATTGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCAC 4468514 Query 50195 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 |||||| | || | | || || ||| || | || ||||||| | ||||| |||| Sbjct 4468513 GAAAGAGGTGGTCTCTCTCTTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACTGTACA 4468454 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 | ||||| || || || || || || |||||||| |||||||| | ||||| | | Sbjct 4468453 TCTCCGAGTGGATATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGA 4468394 Query 50315 TCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 ||| || || | ||| || || ||| | || || ||| || ||||| ||| Sbjct 4468393 CCTGGACATCCG-ACATGAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCC 4468335 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAAT---GTT---TTTCGTTGGGTGTTAGTTTA 50427 || || ||||| | || || | || || | ||| ||||| | || | | Sbjct 4468334 GCGAAGAACGCGAGCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCA---TC 4468278 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 | |||||| | ||| | || | ||| || || || | ||||||||||| ||||| Sbjct 4468277 TCCCAATCGCGAACATCCTGCGACAGATCGACCTCCTCGGCAGTCCAAAATGAAGCCTCG 4468218 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 ||||| || ||||| | |||||| | | |||||||| || || || Sbjct 4468217 GCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGAAACAT 4468171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718158824068360