Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1104 168 9e-37 seq6695 136 5e-27 >seq1104 Length=4098138 Score = 168 bits (186), Expect = 9e-37 Identities = 415/622 (67%), Gaps = 17/622 (3%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || |||||||||||||| || || || |||| || || ||||| || || || | | Sbjct 1191358 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAAT 1191417 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||||| || |||||||| ||||||||||| | |||| | | | || || ||||| Sbjct 1191418 CCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCG-CGCAGAAGCTGCCGGAGAAGAA 1191476 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG----TCAT 42239 ||| ||||| || || ||||| || |||||||| | | || ||| | | Sbjct 1191477 GATCCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAA----GCTCTGAGACCCGT 1191532 Query 42240 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 ||||| || ||||| | |||||||| || ||||| || || || ||||| Sbjct 1191533 CGATCCATTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGC 1191592 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 ||| || | || | | || || || || | || || |||| | ||||| |||| Sbjct 1191593 GAAAAAGGTGGTCTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACA 1191652 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 | || ||||| ||||| || || || ||||| || |||||||| | ||||| | | Sbjct 1191653 TCTCCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGA 1191712 Query 42420 CCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 |||| || || | ||| || || ||| | || || ||| || ||||| ||| Sbjct 1191713 CCTGAACATC-GGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCG 1191771 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATT 42534 ||||| || || | ||||| | || || | |||| ||| ||| | || | Sbjct 1191772 GCAAAGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCG-CCGTCGTTCAGGGTCTTCTC 1191830 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 |||||| || ||| | || | ||| || || || | |||||||| || || || || Sbjct 1191831 CCAATCTCGGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGC 1191890 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 ||| || ||||| | |||||| | | || ||||||| ||||| ||| ||||| | || Sbjct 1191891 CTTCTTGTACATCTCCCAGATCTGAGGAAATTGAATCGGGAACATACAGAATCTGTCAGG 1191950 Query 42655 ATTTGGTGCAAGGATCGGTTCC 42676 | || | |||| ||| ||| Sbjct 1191951 CGTCGGCGTCAGGAGCGGCTCC 1191972 >seq6695 Length=6602074 Score = 136 bits (150), Expect = 5e-27 Identities = 385/584 (66%), Gaps = 13/584 (2%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| |||||||||||||| || || || |||| || |||||||| || || || | Sbjct 4468749 ACACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAA 4468690 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182 ||| ||||| | || |||||||| |||||||| || | |||| || || || |||| Sbjct 4468689 TCCCGGCATCAACCCCCGCTTTTTTAGCCAAAAAATCG-CGCAGAAACTGCCGGAGAAGA 4468631 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 42242 |||| ||||| || || ||||| || |||||||| | | | | | | | Sbjct 4468630 AGATCCCTTCGACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGACCCGTCGA 4468571 Query 42243 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 42302 |||| || ||||| | |||||||| || ||||| | || || |||||| || Sbjct 4468570 TCCATTTCATTGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACGAA 4468511 Query 42303 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTT 42362 |||| | || | | || || ||| || | || ||||||| | ||||| ||||| | Sbjct 4468510 AGAGGTGGTCTCTCTCTTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACTGTACATCT 4468451 Query 42363 CTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCT 42422 | || || || || || || || |||||||| |||||||| | ||||| | |||| Sbjct 4468450 CCGAGTGGATATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGACCT 4468391 Query 42423 GTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 | || || | ||| || || ||| | || || ||| || ||||| ||| || Sbjct 4468390 GGACATCCG-ACATGAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCCGCG 4468332 Query 42482 AAAAACGCCAATACATGTTTTATAAAAT---ATT---TTTCGTCCGGTGTTAATTTATTC 42535 || ||||| | || || | || || | || |||| | | || | | | | Sbjct 4468331 AAGAACGCGAGCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCA---TCTCC 4468275 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 ||||| | ||| | || | ||| || || || | ||||||||||| || || ||| Sbjct 4468274 CAATCGCGAACATCCTGCGACAGATCGACCTCCTCGGCAGTCCAAAATGAAGCCTCGGCC 4468215 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 || || ||||| | |||||| | | ||||| || || || || Sbjct 4468214 TTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGAAACAT 4468171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671036440199240