Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1104 138 2e-27 >seq1104 Length=4098138 Score = 138 bits (152), Expect = 2e-27 Identities = 374/562 (67%), Gaps = 19/562 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| |||||| ||||||| |||||||| | ||| |||||||||||| Sbjct 1191911 ATCTGGGAGATGTACAAGAAGGCTGAGGCCTCGTTTTGGACCGCCGAGGAGGTCGATCTG 1191852 Query 125079 TCCAAGGACCTGTAC--GATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATAT 125136 || |||| ||| | |||||||||| ||| || || || | || || Sbjct 1191851 TCGCAGGA--TGTCCGAGATTGGGAGAAGACCCTGAACGACGGCGAACGGCACTTCATCA 1191794 Query 125137 CGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACAC 125196 | || | | || |||||||||| |||||| || || || || || || | | Sbjct 1191793 CCCATGTCCTCGCTTTCTTTGCCGCCTCCGACGGTATTGTGTTGGAGAACCTCGCTTCCC 1191734 Query 125197 GATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAATCAT 125254 | ||| | || ||| | | | |||| | ||||| || ||||| ||||| ||| Sbjct 1191733 GGTTCATGTCCGATGTTCA-GGTCGCGGAGGCG-CGTGCATTCTACGGCTTCCAGATCGC 1191676 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | || ||||| |||||| | || | |||| ||||| || | Sbjct 1191675 GATCGAGAACATCCATTCGGAGATGTACAGTCTCCTCCTCGACACCTACATAAAGGACGC 1191616 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 | | | | || || ||| ||| ||||| || | || | | || ||||| Sbjct 1191615 GAAGGAGAGAGACCACCTTTTTCGCGCCATCGAGACCATTCCTTGCGTCGCCAAGAAGGC 1191556 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG---TACGCCGACAGACTGGT 125431 || |||| ||| ||||| |||| |||| | | |||||| ||||| | Sbjct 1191555 ACAGTGGGCGATGAAATGGAT------CGACGGGTCTCAGAGCTTCGCCGAGAGACTCAT 1191502 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGC 125490 || |||||| ||| || || |||||||| || || || || ||| || || ||||||| Sbjct 1191501 CGCCTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGCAGCTTCTGC-GCGATATTTTGGC 1191443 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 | || |||||||| | ||||| ||| | || | |||||||| || || ||||||| Sbjct 1191442 TGAAAAAGCGCGGGTTAATGCCGGGATTAACTTTCTCGAACGAGTTGATCTCGCGAGACG 1191383 Query 125551 AGGGCCTACACTGTGACTTTGC 125572 | ||||| ||||| || || || Sbjct 1191382 AAGGCCTCCACTGCGATTTCGC 1191361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740945734573240