Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1104 138 2e-27
>seq1104
Length=4098138
Score = 138 bits (152), Expect = 2e-27
Identities = 374/562 (67%), Gaps = 19/562 (3%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||||| |||||||| |||||| ||||||| |||||||| | ||| ||||||||||||
Sbjct 1191911 ATCTGGGAGATGTACAAGAAGGCTGAGGCCTCGTTTTGGACCGCCGAGGAGGTCGATCTG 1191852
Query 125079 TCCAAGGACCTGTAC--GATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATAT 125136
|| |||| ||| | |||||||||| ||| || || || | || ||
Sbjct 1191851 TCGCAGGA--TGTCCGAGATTGGGAGAAGACCCTGAACGACGGCGAACGGCACTTCATCA 1191794
Query 125137 CGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACAC 125196
| || | | || |||||||||| |||||| || || || || || || | |
Sbjct 1191793 CCCATGTCCTCGCTTTCTTTGCCGCCTCCGACGGTATTGTGTTGGAGAACCTCGCTTCCC 1191734
Query 125197 GATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAATCAT 125254
| ||| | || ||| | | | |||| | ||||| || ||||| ||||| |||
Sbjct 1191733 GGTTCATGTCCGATGTTCA-GGTCGCGGAGGCG-CGTGCATTCTACGGCTTCCAGATCGC 1191676
Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314
||| |||||| | || ||||| |||||| | || | |||| ||||| || |
Sbjct 1191675 GATCGAGAACATCCATTCGGAGATGTACAGTCTCCTCCTCGACACCTACATAAAGGACGC 1191616
Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374
| | | | || || ||| ||| ||||| || | || | | || |||||
Sbjct 1191615 GAAGGAGAGAGACCACCTTTTTCGCGCCATCGAGACCATTCCTTGCGTCGCCAAGAAGGC 1191556
Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG---TACGCCGACAGACTGGT 125431
|| |||| ||| ||||| |||| |||| | | |||||| ||||| |
Sbjct 1191555 ACAGTGGGCGATGAAATGGAT------CGACGGGTCTCAGAGCTTCGCCGAGAGACTCAT 1191502
Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGC 125490
|| |||||| ||| || || |||||||| || || || || ||| || || |||||||
Sbjct 1191501 CGCCTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGCAGCTTCTGC-GCGATATTTTGGC 1191443
Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550
| || |||||||| | ||||| ||| | || | |||||||| || || |||||||
Sbjct 1191442 TGAAAAAGCGCGGGTTAATGCCGGGATTAACTTTCTCGAACGAGTTGATCTCGCGAGACG 1191383
Query 125551 AGGGCCTACACTGTGACTTTGC 125572
| ||||| ||||| || || ||
Sbjct 1191382 AAGGCCTCCACTGCGATTTCGC 1191361
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740945734573240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |