Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq6695 104 2e-17
seq7521 93.3 3e-14
>seq6695
Length=6602074
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||||||| | | ||| | || || || || || ||||| |||||||| ||
Sbjct 805095 CCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCA 805036
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | || | ||||| | || || ||||| | || | | |||||||| ||
Sbjct 805035 AGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGG 804976
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|||||||||||||| ||| ||||| ||||||| | || ||||| ||| |||| ||
Sbjct 804975 ATTCCTTCTTTGTCTTGAATCTTTGC-CTTTACATTGTCAATGGTGTCGGAGCTTTCAAC 804917
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| | ||| || |||||||| || ||||| ||||| || || ||||||
Sbjct 804916 CTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCATA 804868
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||||||| | | ||| | || || || || || ||||| |||||||| ||
Sbjct 810227 CCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCA 810168
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | || | ||||| | || || ||||| | || | | |||||||| ||
Sbjct 810167 AGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGG 810108
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|||||||||||||| ||| ||||| ||||||| | || ||||| ||| |||| ||
Sbjct 810107 ATTCCTTCTTTGTCTTGAATCTTTGC-CTTTACATTGTCAATGGTGTCGGAGCTTTCAAC 810049
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| | ||| || |||||||| || ||||| ||||| || || ||||||
Sbjct 810048 CTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCATA 810000
>seq7521
Length=6323785
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| |||||||| || || || ||||||||||| || | || | ||||| | ||
Sbjct 4430732 TGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCATCTTCCAGCTGC 4430791
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| || || | || | | |||||||||| ||| |||||||||||||| ||| |||
Sbjct 4430792 TTCCCGGCAAAGATGAGTCTTTGTTGGTCGGGTGGGATTCCTTCTTTGTCCTGAATCTTG 4430851
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
||| ||| | || ||||| ||| |||| || || | ||| || || || || ||
Sbjct 4430852 GCCTTCACATTGTCAATGGTGTCGGAGCTTTCCACCTCGAGGGTGATCGTCTTGCCAGTA 4430911
Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364
||||| || || || || ||||||
Sbjct 4430912 AGAGTCTTCACGAAGATCTGCATA 4430935
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||||||| | | ||| | || ||||| || || ||||| |||||||| |||
Sbjct 4430936 CCACCTCTCAACCGGAGAACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCC 4430995
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | ||||| | ||||| || || | || | | ||| ||||| |||
Sbjct 4430996 AAGGTGCGGCCATCTTCGAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGA 4431055
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| ||||| ||||| ||| ||| | || ||||| || | || ||
Sbjct 4431056 ATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTGTCAATGGTGTCCGAGCTCTCGACT 4431115
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| | ||| ||||| || || || || ||||| ||||| ||||||||
Sbjct 4431116 TCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACAAAGATTTGCAT 4431162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362125132191309
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |