Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6695 104 2e-17 seq7521 93.3 3e-14 >seq6695 Length=6602074 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | ||| | || || || || || ||||| |||||||| || Sbjct 805095 CCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCA 805036 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | ||||| | || || ||||| | || | | |||||||| || Sbjct 805035 AGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGG 804976 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||||| ||| ||||| ||||||| | || ||||| ||| |||| || Sbjct 804975 ATTCCTTCTTTGTCTTGAATCTTTGC-CTTTACATTGTCAATGGTGTCGGAGCTTTCAAC 804917 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| || |||||||| || ||||| ||||| || || |||||| Sbjct 804916 CTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCATA 804868 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | ||| | || || || || || ||||| |||||||| || Sbjct 810227 CCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCA 810168 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | ||||| | || || ||||| | || | | |||||||| || Sbjct 810167 AGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGG 810108 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||||| ||| ||||| ||||||| | || ||||| ||| |||| || Sbjct 810107 ATTCCTTCTTTGTCTTGAATCTTTGC-CTTTACATTGTCAATGGTGTCGGAGCTTTCAAC 810049 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| || |||||||| || ||||| ||||| || || |||||| Sbjct 810048 CTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCATA 810000 >seq7521 Length=6323785 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || ||||||||||| || | || | ||||| | || Sbjct 4430732 TGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCATCTTCCAGCTGC 4430791 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | || | | |||||||||| ||| |||||||||||||| ||| ||| Sbjct 4430792 TTCCCGGCAAAGATGAGTCTTTGTTGGTCGGGTGGGATTCCTTCTTTGTCCTGAATCTTG 4430851 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| ||| |||| || || | ||| || || || || || Sbjct 4430852 GCCTTCACATTGTCAATGGTGTCGGAGCTTTCCACCTCGAGGGTGATCGTCTTGCCAGTA 4430911 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || || |||||| Sbjct 4430912 AGAGTCTTCACGAAGATCTGCATA 4430935 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | ||| | || ||||| || || ||||| |||||||| ||| Sbjct 4430936 CCACCTCTCAACCGGAGAACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCC 4430995 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| | ||||| || || | || | | ||| ||||| ||| Sbjct 4430996 AAGGTGCGGCCATCTTCGAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGA 4431055 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||| ||| ||| | || ||||| || | || || Sbjct 4431056 ATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTGTCAATGGTGTCCGAGCTCTCGACT 4431115 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || || ||||| ||||| |||||||| Sbjct 4431116 TCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACAAAGATTTGCAT 4431162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362125132191309