Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5186 87.8 1e-12 seq7521 86.0 5e-12 seq1 86.0 5e-12 >seq5186 Length=9353477 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| || | | | ||||| |||| ||| |||||||| || ||||||||||| | Sbjct 4547137 TTCCTCCACGGAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCAG 4547078 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| ||| | | || ||||||||||| || || | || || |||||||||||| || Sbjct 4547077 CCAGTGTCCTCCCATCTTCCAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGGG 4547018 Query 18933 GCACGCCCTCTTTGTC 18948 | | || || ||||| Sbjct 4547017 GAATCCCTTCCTTGTC 4547002 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | || |||||||| || || ||||||||||| | || | ||| Sbjct 7865815 AACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGCAAGAGTACGACCATCC 7865874 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||||||| ||||| ||| | || || |||||||| ||| ||| | ||||| ||||| Sbjct 7865875 TCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCC 7865934 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || || ||| || | | ||| || ||| |||| || | || ||||| Sbjct 7865935 TGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAACGTGATGGTC 7865994 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || | || || ||||| || ||||| Sbjct 7865995 TTACCGGTCAGGGTCTTCACAAAGATCTGCAT 7866026 >seq7521 Length=6323785 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| || |||||||||||||| | ||| | ||||||||||||| || || Sbjct 4430282 GTTGATTCCTTCTGGATATTGTAATCCGCTAGGGTTCTTCCGTCCTCCAGCTGCTTCCCT 4430341 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || ||||||||||| ||| ||| | ||||| ||||| ||| || ||| Sbjct 4430342 GCAAAGATGAGTCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCTTGAATCTTTGCTTTC 4430401 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | ||| || || | || ||| || | || ||||| || || || | || Sbjct 4430402 ACATTGTCGATTGTGTC-CGAGCTCTCTACCTCCAGAGTGATGGTCTTGCCCGTGAGTGT 4430460 Query 19024 TTTGACAAAAATTTGCATT 19042 || ||||| || |||||| Sbjct 4430461 CTTCACAAAGATCTGCATT 4430479 >seq1 Length=11827220 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| ||||||| | | |||| ||| | ||||||||||| || || ||||| |||| Sbjct 5218646 TTCCACCTCGCAGACGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCG 5218705 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | | ||||||||||| ||||| ||| | || || |||||||| ||| | Sbjct 5218706 CCAGGGTGCGGCCATCCTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTG 5218765 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTC- 18990 | | ||||| ||||| || || || || | | ||| || | ||| |||| Sbjct 5218766 GGATCCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGT---GTCAGAGCTCT 5218822 Query 18991 CG-TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| ||| ||||| || || || | ||| || ||||| || ||||| Sbjct 5218823 CGACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACAAATATCTGCAT 5218874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414510910629106