Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6636 104 2e-17 seq5186 89.7 4e-13 seq8189 84.2 2e-11 seq6695 84.2 2e-11 seq5760 84.2 2e-11 seq1 84.2 2e-11 >seq6636 Length=1297912 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || || | | || |||||||||| ||||| ||| || | Sbjct 787853 TCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGACCGTCCTCCAGTTGCTTCCCGGCGAAG 787912 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || || |||||||| ||| ||| | | |||||||||| ||| || ||| | | Sbjct 787913 ATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGAATCTTGGCCTTCACATTG 787972 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || || |||| ||||| ||| | ||||| || || || || || ||||||||| Sbjct 787973 TCGATCGTGTCGGAGGACTCGACCTCTAGGGTTATAGTCTTCCCCGTAAGGGTTTTCACA 788032 Query 48716 AAAATCTGCATC 48727 |||||||||||| Sbjct 788033 AAAATCTGCATC 788044 >seq5186 Length=9353477 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTC 48573 ||||| || || || || |||||| || ||||||||||| | ||| || || | || Sbjct 7865815 AACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCG-CAAGAGTACGACCATC 7865873 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 |||||||||||||||| | | || | | |||||| ||| || | || |||||||| Sbjct 7865874 CTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATACCCTCCTTGTC 7865933 Query 48634 CATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 | || || |||| | | | ||||| |||| |||| ||| | || |||| Sbjct 7865934 CTGGATCTT-GGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAACGTGATGG 7865992 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | |||||||| || || |||||||| ||||||||| Sbjct 7865993 TCTTACCGGTCAGGGTCTTCACAAAGATCTGCATC 7866027 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || || |||||| || || ||||||||||||| | | | | || || Sbjct 4547118 CACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCAGCCAGTGTCCTCCCATCTTC 4547059 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||| || ||| || | || | | |||||||||| || | | |||||||||| Sbjct 4547058 CAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGGGGAATCCCTTCCTTGTCCTG 4546999 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || |||| | | | || || |||| |||| ||| | || || || || Sbjct 4546998 GATCTTGGTTTTGACATTCTCGATCGTGTCGGAGCTCTCCACCTCCAGAGTGATCGTCTT 4546939 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| |||||||| || || |||||| Sbjct 4546938 GCCGGTGAGGGTTTTCACGAAGATTTGCATC 4546908 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || || || ||| || ||||||||||||| Sbjct 7865596 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGC-AAGTGTACGGCCGTCCTCCAGCTG 7865654 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||| ||| || | | ||||||||| || || Sbjct 7865655 CTTTCCAGCGAATATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGTATCTT 7865714 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 | ||| | | | || || || || | |||| || | ||| || || |||||| Sbjct 7865715 CGCCTTCACGTTGTCG--ATCGTGTCCGAGCTCTCCACTTCCAGTGTGATAGTCTTACCG 7865772 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || ||||| || ||||||||| Sbjct 7865773 GTCAGGGTCTTCACGAAGATCTGCATC 7865799 >seq8189 Length=468 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| || || | || |||| || ||||| Sbjct 216 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCAAGCTGT 157 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||||||| ||| | | |||||||||| || || Sbjct 156 TTCCCGGCGAAGATCAGGCGCTGCTGATCCGGCGGGATCCCTTCCTTGTCCTGGATCTTA 97 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | |||||||| | || || ||| | |||||||| || || || Sbjct 96 GCCTTCACATTGTCGATGGTATCCGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGTT 37 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || |||||||| || ||||||||| Sbjct 36 AGGGTTTTCACGAAGATCTGCATC 13 >seq6695 Length=6602074 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || || ||||||||||| | || | |||||||||||||| ||| | | Sbjct 811331 TCCTTCTGGATATTGTAATCAGCTAGGGTGCGTCCATCCTCCAGCTGCTTCCCGGCAAAG 811272 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | | |||||| || || | | |||||||||| || ||| ||| | Sbjct 811271 ATGAGCCTCTGCTGGTCGGGTGGGATCCCTTCCTTGTCCTGGATCTTCGCCTTTACGTTG 811212 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | |||||||| | |||| ||||| ||||||||||| || ||||| || ||||| Sbjct 811211 TCAATGGTATCCGAGCTCTCCACCTCGAGAGTTATGGTTTTCCCCGTGAGGGTCTTCACG 811152 Query 48716 AAAATCTGCAT 48726 ||||||||||| Sbjct 811151 AAAATCTGCAT 811141 >seq5760 Length=2305957 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| || || | || |||| || ||||| Sbjct 1766428 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCAAGCTGT 1766369 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||||||| ||| | | |||||||||| || || Sbjct 1766368 TTCCCGGCGAAGATCAGGCGCTGCTGATCCGGCGGGATCCCTTCCTTGTCCTGGATCTTA 1766309 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | |||||||| | || || ||| | |||||||| || || || Sbjct 1766308 GCCTTCACATTGTCGATGGTATCCGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGTT 1766249 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || |||||||| || ||||||||| Sbjct 1766248 AGGGTTTTCACGAAGATCTGCATC 1766225 >seq1 Length=11827220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || |||||| || |||||||| || |||| || | |||||| Sbjct 5218666 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCC 5218725 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||||||| | | || | | |||||| ||| || | | ||||||||| Sbjct 5218726 AGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGG 5218785 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | ||||| || | ||| ||||| || ||||| || Sbjct 5218786 ATCTTAGCCTTGACATTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTG 5218845 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| |||||||| |||||||| Sbjct 5218846 CCGGTCAGAGTCTTCACAAATATCTGCAT 5218874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421188313646249