Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2 111 8e-20 seq6695 109 3e-19 seq5186 109 3e-19 seq9804 107 1e-18 seq7521 107 1e-18 seq5991 105 3e-18 seq6186 104 1e-17 seq11203 100 1e-16 seq10304 98.7 5e-16 seq6431 98.7 5e-16 seq1 95.1 6e-15 seq6747 91.5 8e-14 seq3309 86.0 3e-12 >seq2 Length=4120898 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 215100 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 215041 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 215040 CAACTGAGCTAATGGGCC 215023 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 3755211 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 3755270 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| || || Sbjct 3755271 TGAGCTAATAGGACG 3755285 >seq6695 Length=6602074 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11445 AAAAATCAAATTG---GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||| |||||| ||||||| | | |||||||| |||||||||||||||||||||| Sbjct 1213970 AAAAACTAAATTGATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACG 1213911 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 1213910 ACGCTCTAACCAACTGAGCTAATGGGCC 1213883 >seq5186 Length=9353477 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1991286 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1991227 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1991226 TGAGCTAATGGGCC 1991213 >seq9804 Length=16019 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||||| | | |||||||| ||||||||||||||||||| |||| Sbjct 12653 AAAAAATTAGGTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCGCGAC 12594 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 12593 GCTCTAACCAACTGAGCTAATAGGCC 12568 >seq7521 Length=6323785 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| | | |||||||| |||||||||||||||||||||| | Sbjct 5162173 AAAAAATTTGAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGGC 5162114 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 5162113 GCTCTAACCAACTGAGCTAATGGGCC 5162088 >seq5991 Length=8924634 Score = 105 bits (116), Expect = 3e-18 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAAT-CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 || |||| |||| ||||||||| | | |||||||| ||||||||||||||||||| ||| Sbjct 3896976 AACAAATACAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCGCGA 3896917 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 3896916 CGCTCTAACCAACTGAGCTAATAGGCC 3896890 >seq6186 Length=1600628 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 973610 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 973669 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 973670 TGAGCTAATAGGCCGT 973685 >seq11203 Length=4714577 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||| ||||||||| |||||| Sbjct 3257864 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCGCGACGCTCTAACCAAC 3257805 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3257804 TGAGCTAATAGGCC 3257791 >seq10304 Length=4769457 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 4343245 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 4343186 Query 11513 AACTGAGCTAATGGGCCG 11530 | |||||||||| || || Sbjct 4343185 AGCTGAGCTAATAGGACG 4343168 >seq6431 Length=1380396 Score = 98.7 bits (108), Expect = 5e-16 Identities = 89/111 (80%), Gaps = 9/111 (8%) Strand=Plus/Minus Query 11427 GGAAATATAGAATTAATAAAAAATCAA------ATTGGCCCATGAAAGGATCGAACCTTC 11480 ||||| || ||| | ||| |||| ||| ||||||||||| | | |||||||| | Sbjct 572040 GGAAA-ATGGAAATTATATAAAAACAACTAAGAATTGGCCCATGCAGGTTTCGAACCTGC 571982 Query 11481 GACCTTCGCGTTATTAGCACGACG--CTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| |||| |||| |||||||||| |||| Sbjct 571981 GACCTTCGCGTTATTAGCACGACGCTCTCTAACCAGCTGAGCTAATAGGCC 571931 >seq1 Length=11827220 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| | | |||||||| ||||||||||||||||||| ||||||||| |||||| Sbjct 3311026 TGGCCTATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCGCGACGCTCTAACCAAC 3311085 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3311086 TGAGCTAATAGGCC 3311099 >seq6747 Length=1176643 Score = 91.5 bits (100), Expect = 8e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||| Sbjct 910944 TCGAACCTGCGACCTTCGCGTTATTAGCGCGACGCTCTAACCAACTGAGCTAATAGGCC 910886 >seq3309 Length=3363706 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||||||||||||||||| |||| | | |||||| Sbjct 2716693 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGGTCGACAGTTTAACCAAC 2716634 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2716633 TGAGCTAATGGGCC 2716620 Score = 82.4 bits (90), Expect = 4e-11 Identities = 60/69 (87%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 11462 ATGAAAGGAT-CGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGC 11520 || ||||| | ||||||| ||| ||||||||||||||||| ||||||| ||||||| ||| Sbjct 1571543 ATTAAAGGTTTCGAACCTGCGATCTTCGCGTTATTAGCACAACGCTCTAACCAACTAAGC 1571602 Query 11521 TAATGGGCC 11529 |||| |||| Sbjct 1571603 TAATAGGCC 1571611 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261452163367924