Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9362 143 4e-30 seq5510 127 3e-25 seq5355 127 3e-25 seq7521 123 4e-24 seq8319 116 6e-22 >seq9362 Length=5148269 Score = 143 bits (158), Expect = 4e-30 Identities = 182/249 (73%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||||||||||||||| ||||| || ||||| || ||||||||| | || |||| Sbjct 1631510 GAGATAACATCCAAGGAATCACGAAGCCCGCGATCCGGCGGCTGGCTCGTAGAGGAGGAG 1631569 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || || || |||| ||||||| | | || | ||||||||||| Sbjct 1631570 TGAAGCGTATCAGCGGTCTGATCTACGAAGAGACCAGAGGAGTGCTCAAGATCTTCCTTG 1631629 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||| || || || || || |||||||| | | ||||| || ||| Sbjct 1631630 AGAATGTTATCAGAGACGCCGTCACGTACACGGAGCACGCAAGGAGAAAGACAGTAACCG 1631689 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| |||||||||| ||||| | ||||| | | | || ||||| || ||| Sbjct 1631690 CCATGGATGTCGTCTATGCTTTGAAGAGACAAGGAAGAACTCTCTACGGTTTCGGTGGTT 1631749 Query 16698 A-ATCTTCT 16705 | |||| || Sbjct 1631750 AGATCTGCT 1631758 Score = 113 bits (124), Expect = 7e-21 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||||||||| ||||| || || | || ||||| ||| | || ||||| Sbjct 1344452 GATAACATCCAAGGAATCACGAAGCCGGCGATTAGGCGGCTGGCGCGTAGAGGAGGAGTG 1344393 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || ||| || | || ||||||| | | || | |||||||||||| || Sbjct 1344392 AAGCGAATCAGTGGTCTGATATACGAAGAGACCAGGGGAGTGCTCAAGATCTTCCTCGAG 1344333 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| ||| || || | || || |||||||| | | |||||||| ||| || Sbjct 1344332 AACGTCATCAGAGACGCCGTGACTTACACGGAGCACGCCAGGAGAAAGACTGTGACCGCC 1344273 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||||||| || |||| | ||||| Sbjct 1344272 ATGGACGTCGTCTACGCTCTGAAGAGGCAAGG 1344241 >seq5510 Length=2415207 Score = 127 bits (140), Expect = 3e-25 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||||||||||||||| || || | ||||||||||| | || || || Sbjct 1293527 GATAACATCCAAGGAATCACCAAGCCGGCGATTAGGCGTCTGGCTCGAAGAGGAGGGGTG 1293586 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | || ||| |||| ||||||| | | || | ||||||||| | || Sbjct 1293587 AAGCGTATAAGCGGTTTGATCTACGAAGAGACAAGAGGAGTGCTCAAGATCTTCTTGGAG 1293646 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| ||| || || || || || |||||||| | | ||||| || ||| || Sbjct 1293647 AACGTCATCAGAGACGCGGTCACGTACACGGAGCACGCCAGGAGAAAGACGGTGACCGCC 1293706 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 |||||| |||||||||| ||||| | ||||| || Sbjct 1293707 ATGGATGTCGTCTATGCTTTGAAGAGGCAAGGACG 1293741 Score = 122 bits (134), Expect = 1e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || | | |||||||| | || || | Sbjct 1152005 GAGACAACATCCAAGGAATCACCAAGCCGGCAATTAGGAGGCTGGCTCGAAGAGGAGGGG 1152064 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| || | |||||||||| | | || | ||||||||||| Sbjct 1152065 TGAAGCGTATCAGTGGTCTGATTTATGAAGAGACCAGAGGAGTCCTCAAGATCTTCCTAG 1152124 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| ||| || ||| | || || |||||||| | | ||||| || ||| Sbjct 1152125 AGAACGTCATCAGAGACGCTGTGACGTACACTGAGCACGCCAGGAGAAAGACGGTGACCG 1152184 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| ||||||| || ||||| | |||||| Sbjct 1152185 CCATGGATGTCGTCTACGCCTTGAAGAGGCAAGGC 1152219 >seq5355 Length=2579661 Score = 127 bits (140), Expect = 3e-25 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| |||||||| |||||||| || || || |||||||| | ||||||||| Sbjct 785062 GACAACATCCAGGGAATCACTAAGCCAGCGATTCGGCGGTTGGCTCGTAGGGGTGGAGTC 785003 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| || | || || |||| ||||| ||| | ||||||||| | || Sbjct 785002 AAGCGTATCAGTGGTCTGATATACGAGGAGACTCGTGGTGTCCTCAAGATCTTCTTGGAG 784943 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | || || || || |||||||||||| | ||||| || ||| || Sbjct 784942 AATGTCATTCGAGACGCCGTCACTTACACCGAGCACGCTCGGAGGAAGACGGTGACCGCC 784883 Query 16640 ATGGATATCGTCTATGCA 16657 ||||| ||||||| ||| Sbjct 784882 ATGGACGTCGTCTACGCA 784865 >seq7521 Length=6323785 Score = 123 bits (136), Expect = 4e-24 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||| ||||| ||||| || || | || |||||||| | || ||||| Sbjct 2031338 GACAACATCCAAGGGATCACGAAGCCGGCGATAAGGCGGCTGGCTCGGAGAGGAGGAGTG 2031397 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| | ||| || |||| || |||| | | || |||||||||||||| || Sbjct 2031398 AAGCGCATAAGTGGTCTGATCTACGAGGAGACCAGAGGGGTCCTGAAGATCTTCCTCGAG 2031457 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||||| || ||| || || ||||||||||| | | ||||| |||||| || Sbjct 2031458 AACGTTATCAGAGACGCTGTCACGTACACCGAGCACGCCAGGAGGAAGACGGTCACCGCC 2031517 Query 16640 ATGGATATCGTCTATGCATTGAA 16662 |||||| ||||||| || |||| Sbjct 2031518 ATGGATGTCGTCTACGCCCTGAA 2031540 Score = 123 bits (136), Expect = 4e-24 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||| ||||| ||||| || || | || |||||||| | || ||||| Sbjct 2055859 GACAACATCCAAGGGATCACGAAGCCGGCGATAAGGCGGCTGGCTCGGAGAGGAGGAGTG 2055800 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| | ||| || |||| || |||| | | || |||||||||||||| || Sbjct 2055799 AAGCGCATAAGTGGTCTGATCTACGAGGAGACCAGAGGGGTCCTGAAGATCTTCCTCGAG 2055740 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||||| || ||| || || ||||||||||| | | ||||| |||||| || Sbjct 2055739 AACGTTATCAGAGACGCTGTCACGTACACCGAGCACGCCAGGAGGAAGACGGTCACCGCC 2055680 Query 16640 ATGGATATCGTCTATGCATTGAA 16662 |||||| ||||||| || |||| Sbjct 2055679 ATGGATGTCGTCTACGCCCTGAA 2055657 >seq8319 Length=5175100 Score = 116 bits (128), Expect = 6e-22 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||||||||||||||| ||||| || || | ||| |||||||| | || || | Sbjct 4074798 GAGATAACATCCAAGGAATCACAAAGCCTGCAATTAGGCGTTTGGCTCGTAGGGGAGGCG 4074857 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| || |||| || |||| ||||| || | ||||| ||||| Sbjct 4074858 TGAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGAGTCCTCAAGATTTTCCTGG 4074917 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || || | ||||| | ||| || ||||||||| | ||||| || ||| Sbjct 4074918 AAAATGTCATTCGCGATGCCGTTACCTACACTGAGCACGCTCGGAGGAAGACGGTGACCG 4074977 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| | || ||||| Sbjct 4074978 CCATGGATGTTGTGTATGC 4074996 Score = 102 bits (112), Expect = 1e-17 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| ||||||||||| ||||| || || || | ||||||| | ||||||| Sbjct 4073357 GAGACAACATTCAAGGAATCACAAAGCCGGCGATTCGGAGGTTGGCTCGCAGAGGTGGAG 4073416 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| | || || |||| || |||| |||| || ||||||| ||| | Sbjct 4073417 TCAAGCGTATAAGCGGTCTGATCTACGAGGAGACACGTGGAGTCCTGAAGATATTCTTGG 4073476 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | || || || || || ||||||||| | ||||| || ||| Sbjct 4073477 AGAACGTCATTCGCGACGCCGTCACTTACACAGAGCACGCTCGGAGGAAGACGGTGACCG 4073536 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| |||| || || | || | |||||| | | | || || ||||| ||| Sbjct 4073537 CCATGGACGTCGTTTACGCGCTCAAGAGGCAAGGCAGGACTCTGTACGGATTTGGGGGTT 4073596 Query 16698 A 16698 | Sbjct 4073597 A 4073597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064000653557