Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq9362 143 4e-30
seq5510 127 3e-25
seq5355 127 3e-25
seq7521 123 4e-24
seq8319 116 6e-22
>seq9362
Length=5148269
Score = 143 bits (158), Expect = 4e-30
Identities = 182/249 (73%), Gaps = 1/249 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||||||||||||||| ||||| || ||||| || ||||||||| | || ||||
Sbjct 1631510 GAGATAACATCCAAGGAATCACGAAGCCCGCGATCCGGCGGCTGGCTCGTAGAGGAGGAG 1631569
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| || || || |||| ||||||| | | || | |||||||||||
Sbjct 1631570 TGAAGCGTATCAGCGGTCTGATCTACGAAGAGACCAGAGGAGTGCTCAAGATCTTCCTTG 1631629
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| |||||| || || || || || |||||||| | | ||||| || |||
Sbjct 1631630 AGAATGTTATCAGAGACGCCGTCACGTACACGGAGCACGCAAGGAGAAAGACAGTAACCG 1631689
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||||||| |||||||||| ||||| | ||||| | | | || ||||| || |||
Sbjct 1631690 CCATGGATGTCGTCTATGCTTTGAAGAGACAAGGAAGAACTCTCTACGGTTTCGGTGGTT 1631749
Query 16698 A-ATCTTCT 16705
| |||| ||
Sbjct 1631750 AGATCTGCT 1631758
Score = 113 bits (124), Expect = 7e-21
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||||||||||||||| ||||| || || | || ||||| ||| | || |||||
Sbjct 1344452 GATAACATCCAAGGAATCACGAAGCCGGCGATTAGGCGGCTGGCGCGTAGAGGAGGAGTG 1344393
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| || ||| || | || ||||||| | | || | |||||||||||| ||
Sbjct 1344392 AAGCGAATCAGTGGTCTGATATACGAAGAGACCAGGGGAGTGCTCAAGATCTTCCTCGAG 1344333
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| ||| || || | || || |||||||| | | |||||||| ||| ||
Sbjct 1344332 AACGTCATCAGAGACGCCGTGACTTACACGGAGCACGCCAGGAGAAAGACTGTGACCGCC 1344273
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| ||||||| || |||| | |||||
Sbjct 1344272 ATGGACGTCGTCTACGCTCTGAAGAGGCAAGG 1344241
>seq5510
Length=2415207
Score = 127 bits (140), Expect = 3e-25
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||||||||||||||||||||| || || | ||||||||||| | || || ||
Sbjct 1293527 GATAACATCCAAGGAATCACCAAGCCGGCGATTAGGCGTCTGGCTCGAAGAGGAGGGGTG 1293586
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| | || ||| |||| ||||||| | | || | ||||||||| | ||
Sbjct 1293587 AAGCGTATAAGCGGTTTGATCTACGAAGAGACAAGAGGAGTGCTCAAGATCTTCTTGGAG 1293646
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| ||| || || || || || |||||||| | | ||||| || ||| ||
Sbjct 1293647 AACGTCATCAGAGACGCGGTCACGTACACGGAGCACGCCAGGAGAAAGACGGTGACCGCC 1293706
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
|||||| |||||||||| ||||| | ||||| ||
Sbjct 1293707 ATGGATGTCGTCTATGCTTTGAAGAGGCAAGGACG 1293741
Score = 122 bits (134), Expect = 1e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||||||||||||||| || || | | |||||||| | || || |
Sbjct 1152005 GAGACAACATCCAAGGAATCACCAAGCCGGCAATTAGGAGGCTGGCTCGAAGAGGAGGGG 1152064
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| || ||| || | |||||||||| | | || | |||||||||||
Sbjct 1152065 TGAAGCGTATCAGTGGTCTGATTTATGAAGAGACCAGAGGAGTCCTCAAGATCTTCCTAG 1152124
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| ||| || ||| | || || |||||||| | | ||||| || |||
Sbjct 1152125 AGAACGTCATCAGAGACGCTGTGACGTACACTGAGCACGCCAGGAGAAAGACGGTGACCG 1152184
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||||| ||||||| || ||||| | ||||||
Sbjct 1152185 CCATGGATGTCGTCTACGCCTTGAAGAGGCAAGGC 1152219
>seq5355
Length=2579661
Score = 127 bits (140), Expect = 3e-25
Identities = 147/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| |||||||| |||||||| |||||||| || || || |||||||| | |||||||||
Sbjct 785062 GACAACATCCAGGGAATCACTAAGCCAGCGATTCGGCGGTTGGCTCGTAGGGGTGGAGTC 785003
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || ||| || | || || |||| ||||| ||| | ||||||||| | ||
Sbjct 785002 AAGCGTATCAGTGGTCTGATATACGAGGAGACTCGTGGTGTCCTCAAGATCTTCTTGGAG 784943
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || || | || || || || |||||||||||| | ||||| || ||| ||
Sbjct 784942 AATGTCATTCGAGACGCCGTCACTTACACCGAGCACGCTCGGAGGAAGACGGTGACCGCC 784883
Query 16640 ATGGATATCGTCTATGCA 16657
||||| ||||||| |||
Sbjct 784882 ATGGACGTCGTCTACGCA 784865
>seq7521
Length=6323785
Score = 123 bits (136), Expect = 4e-24
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| ||||||||||| ||||| ||||| || || | || |||||||| | || |||||
Sbjct 2031338 GACAACATCCAAGGGATCACGAAGCCGGCGATAAGGCGGCTGGCTCGGAGAGGAGGAGTG 2031397
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| | ||| || |||| || |||| | | || |||||||||||||| ||
Sbjct 2031398 AAGCGCATAAGTGGTCTGATCTACGAGGAGACCAGAGGGGTCCTGAAGATCTTCCTCGAG 2031457
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||||||| || ||| || || ||||||||||| | | ||||| |||||| ||
Sbjct 2031458 AACGTTATCAGAGACGCTGTCACGTACACCGAGCACGCCAGGAGGAAGACGGTCACCGCC 2031517
Query 16640 ATGGATATCGTCTATGCATTGAA 16662
|||||| ||||||| || ||||
Sbjct 2031518 ATGGATGTCGTCTACGCCCTGAA 2031540
Score = 123 bits (136), Expect = 4e-24
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| ||||||||||| ||||| ||||| || || | || |||||||| | || |||||
Sbjct 2055859 GACAACATCCAAGGGATCACGAAGCCGGCGATAAGGCGGCTGGCTCGGAGAGGAGGAGTG 2055800
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| | ||| || |||| || |||| | | || |||||||||||||| ||
Sbjct 2055799 AAGCGCATAAGTGGTCTGATCTACGAGGAGACCAGAGGGGTCCTGAAGATCTTCCTCGAG 2055740
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||||||| || ||| || || ||||||||||| | | ||||| |||||| ||
Sbjct 2055739 AACGTTATCAGAGACGCTGTCACGTACACCGAGCACGCCAGGAGGAAGACGGTCACCGCC 2055680
Query 16640 ATGGATATCGTCTATGCATTGAA 16662
|||||| ||||||| || ||||
Sbjct 2055679 ATGGATGTCGTCTACGCCCTGAA 2055657
>seq8319
Length=5175100
Score = 116 bits (128), Expect = 6e-22
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||||||||||||||| ||||| || || | ||| |||||||| | || || |
Sbjct 4074798 GAGATAACATCCAAGGAATCACAAAGCCTGCAATTAGGCGTTTGGCTCGTAGGGGAGGCG 4074857
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| || ||| || |||| || |||| ||||| || | ||||| |||||
Sbjct 4074858 TGAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGAGTCCTCAAGATTTTCCTGG 4074917
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
| | || || | ||||| | ||| || ||||||||| | ||||| || |||
Sbjct 4074918 AAAATGTCATTCGCGATGCCGTTACCTACACTGAGCACGCTCGGAGGAAGACGGTGACCG 4074977
Query 16638 CCATGGATATCGTCTATGC 16656
|||||||| | || |||||
Sbjct 4074978 CCATGGATGTTGTGTATGC 4074996
Score = 102 bits (112), Expect = 1e-17
Identities = 167/241 (69%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||| ||||||||||| ||||| || || || | ||||||| | |||||||
Sbjct 4073357 GAGACAACATTCAAGGAATCACAAAGCCGGCGATTCGGAGGTTGGCTCGCAGAGGTGGAG 4073416
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| | || || |||| || |||| |||| || ||||||| ||| |
Sbjct 4073417 TCAAGCGTATAAGCGGTCTGATCTACGAGGAGACACGTGGAGTCCTGAAGATATTCTTGG 4073476
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| || | || || || || || ||||||||| | ||||| || |||
Sbjct 4073477 AGAACGTCATTCGCGACGCCGTCACTTACACAGAGCACGCTCGGAGGAAGACGGTGACCG 4073536
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
||||||| |||| || || | || | |||||| | | | || || ||||| |||
Sbjct 4073537 CCATGGACGTCGTTTACGCGCTCAAGAGGCAAGGCAGGACTCTGTACGGATTTGGGGGTT 4073596
Query 16698 A 16698
|
Sbjct 4073597 A 4073597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79064000653557
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