Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1104 150 2e-31
seq6695 132 6e-26
>seq1104
Length=4098138
Score = 150 bits (166), Expect = 2e-31
Identities = 396/593 (67%), Gaps = 15/593 (3%)
Strand=Plus/Plus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| |||||||||||||| || || ||||||| || | ||||| || || || | |
Sbjct 1191358 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAAT 1191417
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|| ||||||| || |||||||| ||||||||||| | ||| || || ||||||
Sbjct 1191418 CCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAG 1191477
Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCG--CTGTCATG 33479
|| ||||| || ||| || ||||| || |||||||| | | | | | | | |||
Sbjct 1191478 ATCCCTTCAAC-GCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGACCCGTC--- 1191533
Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539
||||| || ||||| | |||||||| || ||||| || || || |||||
Sbjct 1191534 GATCCATTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCG 1191593
Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599
||| || | || | | || || || || | || || |||| | ||||| |||||
Sbjct 1191594 AAAAAGGTGGTCTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACAT 1191653
Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659
|||||||| ||||| || || || ||||| || |||||||| | ||||| | |
Sbjct 1191654 CTCCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGAC 1191713
Query 33660 CTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718
||| || || | ||| || || || | || || ||| || ||||| ||| |
Sbjct 1191714 CTGAACATC-GGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCGG 1191772
Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG---TTTATTC 33774
|||| || || | ||||| | || || | |||| | | || | || || | |
Sbjct 1191773 CAAAGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGT-TCAGGGTCTTCTCC 1191831
Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834
||||| || ||| | || | ||| || || || | |||||||| || ||||| |||
Sbjct 1191832 CAATCTCGGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGCC 1191891
Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887
|| || ||||| | |||||| | | | |||| || ||||| ||| |||||
Sbjct 1191892 TTCTTGTACATCTCCCAGATCTGAGGAAATTGAATCGGGAACATACAGAATCT 1191944
>seq6695
Length=6602074
Score = 132 bits (146), Expect = 6e-26
Identities = 386/583 (66%), Gaps = 11/583 (2%)
Strand=Plus/Minus
Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362
||| |||||||||||||| || || ||||||| || | |||||| || || || |
Sbjct 4468749 ACACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAA 4468690
Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422
||| ||||| | || |||||||| |||||||| || | ||| || || |||||
Sbjct 4468689 TCCCGGCATCAACCCCCGCTTTTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAA 4468630
Query 33423 GATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT- 33480
||| ||||| || ||| || ||||| || |||||||| | || | | | | ||
Sbjct 4468629 GATCCCTTCGAC-GCAGGCGAAGGCGATGAGTCTCTCGGC-GAAGCTTTG-AGACCCGTC 4468573
Query 33481 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539
||||| || ||||| | |||||||| || ||||| | || || ||||||
Sbjct 4468572 GATCCATTTCATTGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACG 4468513
Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599
|||||| | || | | || || ||| || | || ||||||| | ||||| |||||
Sbjct 4468512 AAAGAGGTGGTCTCTCTCTTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACTGTACAT 4468453
Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659
||||| || || || || || || |||||||| |||||||| | ||||| | |
Sbjct 4468452 CTCCGAGTGGATATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGAC 4468393
Query 33660 CTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718
||| || || | ||| || || || | || || ||| || ||||| ||| |
Sbjct 4468392 CTGGACATCCG-ACATGAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCCG 4468334
Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTT--TATTCC 33775
| || ||||| | || || | || || | ||| | | || | | | | ||
Sbjct 4468333 CGAAGAACGCGAGCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCATCTCCC 4468274
Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835
|||| | ||| | || | ||| || || || | ||||||||||| ||||| ||||
Sbjct 4468273 AATCGCGAACATCCTGCGACAGATCGACCTCCTCGGCAGTCCAAAATGAAGCCTCGGCCT 4468214
Query 33836 TTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878
| || ||||| | |||||| | |||||||| || || ||
Sbjct 4468213 TCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGAAACAT 4468171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622851818996840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |