Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq6747 102 2e-16
seq3309 89.7 1e-12
>seq6747
Length=1176643
Score = 102 bits (112), Expect = 2e-16
Identities = 159/221 (72%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681
||||| || || ||| |||||||| | |||||| || || | |||||| ||||| |
Sbjct 665240 ATGAAAGATGACAGCATTGAGGGTATATATGACACGCTGAAAGAATGTGCTGTTATTAGC 665299
Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740
|| || || || || ||||| || | ||||| | ||||| || | | ||||||||
Sbjct 665300 AAATCAGCTGGTGGCATAGGTGTTTCTGTTCACAACATCCGTGCTACTGGA-AGTTACAT 665358
Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799
||| || || | |||| | || ||||| | ||||| ||||| || ||||| | |||
Sbjct 665359 TCGGGGTACAAATGGGACA-TCTAATGGAATCGTTCCAATGCTGCGGGTGTTCAATGATA 665417
Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840
|||| | ||||| ||||| || ||||| ||| | ||||||
Sbjct 665418 CTGCTCGTTACGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 665457
>seq3309
Length=3363706
Score = 89.7 bits (98), Expect = 1e-12
Identities = 155/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681
||||| || || ||| ||||| || | |||||| || || | ||||| ||||| |
Sbjct 2884000 ATGAAAGATGACAGCATTGAGGGCATATATGACACCCTGAAAGAATGTGCCGTTATTAGC 2883941
Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740
|| || || || || ||||| || | |||||| | |||||| | | | ||||||||
Sbjct 2883940 AAATCAGCTGGTGGTATAGGTGTTTCAGTTCACAATATCCGTGCAACTGGA-AGTTACAT 2883882
Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799
||| ||||| | |||| | || || || | ||||| |||||||| ||||| | |||
Sbjct 2883881 TCGTGGCACGAATGGGACA-TCTAACGGTATTGTTCCTATGCTTCGGGTGTTCAATGATA 2883823
Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839
|||| | || || || || || ||||| ||| | || ||
Sbjct 2883822 CTGCTCGTTATGTTGATCAAGGGGGAGGCAAGAGGAAGGG 2883783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303149051278718
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |