Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6747 102 2e-16 seq3309 89.7 1e-12 >seq6747 Length=1176643 Score = 102 bits (112), Expect = 2e-16 Identities = 159/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| |||||||| | |||||| || || | |||||| ||||| | Sbjct 665240 ATGAAAGATGACAGCATTGAGGGTATATATGACACGCTGAAAGAATGTGCTGTTATTAGC 665299 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || || || || || ||||| || | ||||| | ||||| || | | |||||||| Sbjct 665300 AAATCAGCTGGTGGCATAGGTGTTTCTGTTCACAACATCCGTGCTACTGGA-AGTTACAT 665358 Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 ||| || || | |||| | || ||||| | ||||| ||||| || ||||| | ||| Sbjct 665359 TCGGGGTACAAATGGGACA-TCTAATGGAATCGTTCCAATGCTGCGGGTGTTCAATGATA 665417 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 |||| | ||||| ||||| || ||||| ||| | |||||| Sbjct 665418 CTGCTCGTTACGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 665457 >seq3309 Length=3363706 Score = 89.7 bits (98), Expect = 1e-12 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| || | |||||| || || | ||||| ||||| | Sbjct 2884000 ATGAAAGATGACAGCATTGAGGGCATATATGACACCCTGAAAGAATGTGCCGTTATTAGC 2883941 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || || || || || ||||| || | |||||| | |||||| | | | |||||||| Sbjct 2883940 AAATCAGCTGGTGGTATAGGTGTTTCAGTTCACAATATCCGTGCAACTGGA-AGTTACAT 2883882 Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 ||| ||||| | |||| | || || || | ||||| |||||||| ||||| | ||| Sbjct 2883881 TCGTGGCACGAATGGGACA-TCTAACGGTATTGTTCCTATGCTTCGGGTGTTCAATGATA 2883823 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || || ||||| ||| | || || Sbjct 2883822 CTGCTCGTTATGTTGATCAAGGGGGAGGCAAGAGGAAGGG 2883783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303149051278718