Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq6695 98.7 9e-16
seq7521 89.7 4e-13
seq5265 86.0 5e-12
seq10304 82.4 7e-11
>seq6695
Length=6602074
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || ||||| || | || || ||| |||| ||| |||| || || | |
Sbjct 804869 ATGCAGATCTTCGTAAAGACTCTTACCGGTAAAACGATCACCCTCGAGGTTGAAAGCTCC 804928
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || || ||||||| ||||||||||| || ||||| || |||
Sbjct 804929 GACACCATTGACAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAA 804988
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||||| || | | || ||||| |||||||||| || | | | || || |||
Sbjct 804989 CAGAGACTCATCTTTGCTGGTAAGCAGCTCGAAGATGGAAGGACCCTTGCTGACTACAAC 805048
Query 24171 ATTCAAAAAGAATCTAC 24187
|| ||||| ||||| ||
Sbjct 805049 ATCCAAAAGGAATCAAC 805065
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || ||||| || | || || ||| |||| ||| |||| || || | |
Sbjct 810001 ATGCAGATCTTCGTAAAGACTCTTACCGGTAAAACGATCACCCTCGAGGTTGAAAGCTCC 810060
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || || ||||||| ||||||||||| || ||||| || |||
Sbjct 810061 GACACCATTGACAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAA 810120
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||||| || | | || ||||| |||||||||| || | | | || || |||
Sbjct 810121 CAGAGACTCATCTTTGCTGGTAAGCAGCTCGAAGATGGAAGGACCCTTGCTGACTACAAC 810180
Query 24171 ATTCAAAAAGAATCTAC 24187
|| ||||| ||||| ||
Sbjct 810181 ATCCAAAAGGAATCAAC 810197
>seq7521
Length=6323785
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || | ||||| || |||| ||| |||| || || | |
Sbjct 4430934 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACGATCACCCTCGAGGTGGAAAGCTCC 4430875
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || || |||||| ||||||||||| || || ||||| |||
Sbjct 4430874 GACACCATTGACAATGTGAAGGCCAAGATTCAGGACAAAGAAGGAATCCCACCCGACCAA 4430815
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| ||||| || | | ||| ||||| || ||||||| ||| | | | ||||| |||
Sbjct 4430814 CAAAGACTCATCTTTGCCGGGAAGCAGCTGGAAGATGGCAGGACCCTTGCTGATTACAAC 4430755
Query 24171 ATTCAAAAAGAATCTAC 24187
|| || || ||||| ||
Sbjct 4430754 ATCCAGAAGGAATCCAC 4430738
>seq5265
Length=2761455
Score = 86.0 bits (94), Expect = 5e-12
Identities = 102/136 (75%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143
||||| || |||||||| || ||||||||||| ||||| | | || |||||||| |||
Sbjct 1298951 GACAAGGAGGGCATACCACCTGATCAACAGAGGCTGATATTTGCTGGTAAGCAACTAGAA 1298892
Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|||| ||| | | ||| || || || ||||| ||||| ||||| | ||| |||||||
Sbjct 1298891 GATGGACGAACCCT-AGCAGACTACAATATTCAGAAAGAGTCTACTCTCCATCTAGTGTT 1298833
Query 24203 AAGATTGAGAGGAGGA 24218
|| | || || |||
Sbjct 1298832 GAGGCTCAGGGGTGGA 1298817
>seq10304
Length=4769457
Score = 82.4 bits (90), Expect = 7e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | || || |||||| |||| || || | || ||| | ||||||||| ||
Sbjct 685390 AAGATGCAGATCTTCGTGAAAACACTAACGGGGAAGACCATAACCCTTGAAGTCGAGTCC 685449
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||||||||| | ||||| ||||| ||||| ||||| || || || ||
Sbjct 685450 TCCGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGGATCCCGCCGGAC 685509
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||| | ||||||| || ||| || || | || || | | | | | || || ||
Sbjct 685510 CAGCAGCGGCTGATTTTCGCCGGGAAACAGTTGGAGGACGGCCGCACCCTCGCAGACTAC 685569
Query 24168 AACATTCAAAAAGAATCTAC 24187
||||| || || || || ||
Sbjct 685570 AACATCCAGAAGGAGTCGAC 685589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429871817138595
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |