Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6695 98.7 9e-16 seq7521 89.7 4e-13 seq5265 86.0 5e-12 seq10304 82.4 7e-11 >seq6695 Length=6602074 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || ||||| || | || || ||| |||| ||| |||| || || | | Sbjct 804869 ATGCAGATCTTCGTAAAGACTCTTACCGGTAAAACGATCACCCTCGAGGTTGAAAGCTCC 804928 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||||| ||||||||||| || ||||| || ||| Sbjct 804929 GACACCATTGACAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAA 804988 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | || ||||| |||||||||| || | | | || || ||| Sbjct 804989 CAGAGACTCATCTTTGCTGGTAAGCAGCTCGAAGATGGAAGGACCCTTGCTGACTACAAC 805048 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| ||||| || Sbjct 805049 ATCCAAAAGGAATCAAC 805065 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || ||||| || | || || ||| |||| ||| |||| || || | | Sbjct 810001 ATGCAGATCTTCGTAAAGACTCTTACCGGTAAAACGATCACCCTCGAGGTTGAAAGCTCC 810060 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||||| ||||||||||| || ||||| || ||| Sbjct 810061 GACACCATTGACAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAA 810120 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | || ||||| |||||||||| || | | | || || ||| Sbjct 810121 CAGAGACTCATCTTTGCTGGTAAGCAGCTCGAAGATGGAAGGACCCTTGCTGACTACAAC 810180 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| ||||| || Sbjct 810181 ATCCAAAAGGAATCAAC 810197 >seq7521 Length=6323785 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || |||| ||| |||| || || | | Sbjct 4430934 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACGATCACCCTCGAGGTGGAAAGCTCC 4430875 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || |||||| ||||||||||| || || ||||| ||| Sbjct 4430874 GACACCATTGACAATGTGAAGGCCAAGATTCAGGACAAAGAAGGAATCCCACCCGACCAA 4430815 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| || | | ||| ||||| || ||||||| ||| | | | ||||| ||| Sbjct 4430814 CAAAGACTCATCTTTGCCGGGAAGCAGCTGGAAGATGGCAGGACCCTTGCTGATTACAAC 4430755 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 4430754 ATCCAGAAGGAATCCAC 4430738 >seq5265 Length=2761455 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| || |||||||| || ||||||||||| ||||| | | || |||||||| ||| Sbjct 1298951 GACAAGGAGGGCATACCACCTGATCAACAGAGGCTGATATTTGCTGGTAAGCAACTAGAA 1298892 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| ||| | | ||| || || || ||||| ||||| ||||| | ||| ||||||| Sbjct 1298891 GATGGACGAACCCT-AGCAGACTACAATATTCAGAAAGAGTCTACTCTCCATCTAGTGTT 1298833 Query 24203 AAGATTGAGAGGAGGA 24218 || | || || ||| Sbjct 1298832 GAGGCTCAGGGGTGGA 1298817 >seq10304 Length=4769457 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || |||||| |||| || || | || ||| | ||||||||| || Sbjct 685390 AAGATGCAGATCTTCGTGAAAACACTAACGGGGAAGACCATAACCCTTGAAGTCGAGTCC 685449 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 685450 TCCGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGGATCCCGCCGGAC 685509 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||||| || ||| || || | || || | | | | | || || || Sbjct 685510 CAGCAGCGGCTGATTTTCGCCGGGAAACAGTTGGAGGACGGCCGCACCCTCGCAGACTAC 685569 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 685570 AACATCCAGAAGGAGTCGAC 685589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429871817138595