Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq5186 111 1e-19 seq7521 109 4e-19 seq10304 105 5e-18 seq6695 102 7e-17 seq1 96.9 3e-15 seq6636 91.5 1e-13 >seq5186 Length=9353477 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || | ||| || || | || || ||||||||||| || ||||||||||| ||| Sbjct 7866256 CCACCACGCAACCTGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 7866315 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || | || || |||||| | || |||| ||| |||||| || Sbjct 7866316 AGGGTCCGGCCATCTTCAAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCCGGTGGG 7866375 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || || || ||| || | | | | |||||| | |||| Sbjct 7866376 ATGCCCTCTTTGTCCTGGATCTTAGC--CTTAACGTTGTCAATGGTGTCGGAGCTCTCCA 7866433 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || |||||||| || ||||| || |||||||| Sbjct 7866434 CCTCCAAAGTGATGGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 7866482 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||| || | || | ||||||||| || Sbjct 7865596 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGTGTACGGCCGTCCTCCAGCTGC 7865655 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || || ||||| |||||| || | ||||| ||||| || | | Sbjct 7865656 TTTCCAGCGAATATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGTATCTTC 7865715 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||| | |||| ||||| ||||| || || |||||| Sbjct 7865716 GCCTTCACGTTGTCGATCGTGTCCGAGCTCTCCACTTCCAGTGTGATAGTCTTACCGGTC 7865775 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 7865776 AGGGTCTTCACGAAGATCTGCAT 7865798 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || ||||||||||| || | ||| | ||| Sbjct 7866499 AGAACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCGACCATCC 7866558 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| || | || |||| ||| |||||| ||| | ||||||||||| Sbjct 7866559 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCC 7866618 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | |||||| | ||| |||| ||||| | Sbjct 7866619 TGGATCTTGGC--CTTTACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAACGTGATCG 7866676 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || ||||| || || ||||| Sbjct 7866677 TCTTACCCGTGAGGGTCTTGACGAAGATTTGCAT 7866710 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || ||||| || || ||||||||||| || | |||| || ||||| Sbjct 7866727 AGAACCAAATGGAGGGTTGACTCTTTCTGAATGTTGTAGTCAGCGAGGGTTCTGCCGTCC 7866786 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| ||| || || ||| | || | || ||| ||||| || | ||||| ||||| Sbjct 7866787 TCCAGTTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCC 7866846 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | | |||||| | ||| || | ||||| | Sbjct 7866847 TGGATTTTTGC--CTTGACGTTGTCGATTGTGTCGGAGCTCTCGACCTCAAGAGTGATTG 7866904 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || || || || |||||||| Sbjct 7866905 TCTTGCCTGTGAGGGTCTTAACGAAGATCTGCAT 7866938 >seq7521 Length=6323785 Score = 109 bits (120), Expect = 4e-19 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| |||||||||||||||| ||| | | || Sbjct 4430951 AGAACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCT 4431010 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || ||| | ||||||| || |||||| ||| | || || ||||| Sbjct 4431011 TCGAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGAATTCCTTCCTTGTCC 4431070 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CG-TTTCCACGGTGAT 16899 || ||||| ||| || | | | | |||| ||| |||| || ||| | |||||| Sbjct 4431071 TGGATTTTTGC--CTTAACATTGTCAATGGTGT--CCGAGCTCTCGACTTCAAGGGTGAT 4431126 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| |||||||| || ||||| ||||| || ||||| Sbjct 4431127 GGTCTTTCCGGTGAGTGTTTTCACAAAGATTTGCAT 4431162 >seq10304 Length=4769457 Score = 105 bits (116), Expect = 5e-18 Identities = 153/213 (72%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||| |||||||| || ||||||||||| || | ||| | |||||||||| ||| Sbjct 685595 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCCAACTGT 685536 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || |||| |||||||| |||||| || | || || ||||| || || Sbjct 685535 TTCCCGGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGGATCTTA 685476 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | |||||| || ||| ||| | ||| ||||| || || | Sbjct 685475 GC--CTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCAAGGGTTATGGTCTTCCCCG 685418 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT-TTTGTAG 16942 | || ||||| || || |||||||| |||| || Sbjct 685417 TTAGTGTTTTCACGAAGATCTGCATCTTTGCAG 685385 >seq6695 Length=6602074 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || || || |||| || || || || |||||||| ||||||||||||||| Sbjct 804867 CCACCTCTTAACCGGAGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCC 804808 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | |||||||| ||| | ||||||| || |||||| ||| Sbjct 804807 AAGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGG 804748 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || |||||| || || | | | | ||||| ||| Sbjct 804747 ATTCCTTCCTTGTCCTGGATCTTTGCT--TTGACATTGTCAATGGTGTCCGAACTCTCAA 804690 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||| || ||||| || ||||| ||||| || ||||| Sbjct 804689 CTTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 804641 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || || || |||| || || || || |||||||| ||||||||||||||| Sbjct 809999 CCACCTCTTAACCGGAGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCC 809940 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | |||||||| ||| | ||||||| || |||||| ||| Sbjct 809939 AAGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGA 809880 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || |||||| || || | | | | ||||| ||| Sbjct 809879 ATTCCTTCCTTGTCCTGGATCTTTGCT--TTGACATTGTCAATGGTGTCCGAACTCTCAA 809822 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||| || ||||| || ||||| ||||| || ||||| Sbjct 809821 CTTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 809773 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||| || || ||||||||||| || | |||| | ||||||| ||| Sbjct 810887 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGCAAGGGTTCGTCCATCCTCCAGCTGT 810828 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| |||||| ||| | || || || || ||| | | Sbjct 810827 TTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTATCCTGAATCTTC 810768 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | || || | ||| ||| | || |||||||| || || Sbjct 810767 GCCTTAACATTGTCAATGGTATCTGAGCTCTCAACTTCAAGAGTTATGGTTTTCCCCGTG 810708 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| |||||||| Sbjct 810707 AGGGTCTTGACAAAGATCTGCAT 810685 >seq1 Length=11827220 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | || || || |||||||| || ||||||||||| ||| Sbjct 5218420 CCACCACGCAGACGCAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCC 5218479 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||||| || || || ||| | || || ||||| |||||| || Sbjct 5218480 AGGGTGCGACCGTCCTCCAGCTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGG 5218539 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TC 16884 | || || ||||| || || || |||||| | | | | |||| ||| || || Sbjct 5218540 ATCCCTTCCTTGTCCTGGATCTTGGC--CTTCACGTTGTCAATGGTGT--CCGAGCTTTC 5218595 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | |||| ||||||||| || || ||||| || || || |||||||||||| Sbjct 5218596 CACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATT 5218647 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || |||| || || || |||||||| || ||||||||||| ||| Sbjct 5218648 CCACCTCGCAGACGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 5218707 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| || || || ||| | || |||| ||| |||||| || Sbjct 5218708 AGGGTGCGGCCATCCTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGG 5218767 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | ||||| | ||| Sbjct 5218768 ATCCCCTCCTTGTCCTGGATCTTAGC--CTTGACATTGTCGATGGTGTCAGAGCTCTCGA 5218825 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || |||||||| || || ||||| |||||||| Sbjct 5218826 CCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACAAATATCTGCAT 5218874 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || |||||||||||||||| || | | ||| Sbjct 5218891 AGGACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTACGGCCATCC 5218950 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| || || || ||| | || | || ||| |||||| || | ||| || ||||| Sbjct 5218951 TCCAACTGCTTACCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 5219010 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | | ||||| | ||| |||| ||||| | Sbjct 5219011 TGGATCTTGGCT--TTCACGTTGTCGATGGTGTCAGAGCTCTCGACCTCCAAAGTGATCG 5219068 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || ||||| || || ||||| Sbjct 5219069 TCTTGCCCGTAAGGGTCTTGACGAAGATTTGCAT 5219102 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||| |||| |||| | ||||| Sbjct 5219119 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCGGCCGTCC 5219178 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || || | || |||| ||| ||||| || | |||||| ||||| Sbjct 5219179 TCAAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCC 5219238 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | | |||||| | ||| |||| ||||| | Sbjct 5219239 TGAATCTTAGCT--TTCACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAAGTGATCG 5219296 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || ||||| || || ||||| Sbjct 5219297 TCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 5219330 >seq6636 Length=1297912 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || |||| || ||||| || ||||| || |||||||||||||| Sbjct 787817 CCTCCTCTGAGACGGAGAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCG 787876 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| ||| || || || | || | ||||| |||||| || Sbjct 787877 AGTGTCCGACCGTCCTCCAGTTGCTTCCCGGCGAAGATCAATCGCTGCTGGTCCGGCGGG 787936 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| ||| | |||||| | | | | |||||| || ||| Sbjct 787937 ATTCCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATCGTGTCGGAGGACTCGACC 787996 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||| || || || || || || ||||| |||||||||||||| || Sbjct 787997 TCTAGGGTTATAGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCATCTT 788046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405027526564510