Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1104 154 2e-32 seq6695 132 6e-26 >seq1104 Length=4098138 Score = 154 bits (170), Expect = 2e-32 Identities = 399/594 (67%), Gaps = 17/594 (3%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || |||||||||||||| || || ||||||| || || ||||| || || || | | Sbjct 1191358 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAAT 1191417 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 || ||||||| || |||||||| ||||||||||| | |||| | | | || || ||||| Sbjct 1191418 CCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCG-CGCAGAAGCTGCCGGAGAAGAA 1191476 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCG--CTGTCATG 32836 || ||||| || || ||||| || |||||||| | | | | | | | ||| Sbjct 1191477 GATCCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGACCCGTC--- 1191533 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| || ||||| | |||||||| || ||||| || ||||| || || Sbjct 1191534 GATCCATTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCG 1191593 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 ||| || | || | | || || || || | || || || | | ||||| ||||| Sbjct 1191594 AAAAAGGTGGTCTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACAT 1191653 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAA 33015 |||||||| ||||| || || || || || || |||||||| ||| | ||||| | | Sbjct 1191654 CTCCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCA-CGCGCCTCCGCGA 1191712 Query 33016 TCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 33074 ||| || || | ||| || || || | || || ||| || ||||| ||| Sbjct 1191713 CCTGAACATC-GGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCG 1191771 Query 33075 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG---TTTATT 33130 ||||| || || | ||||| | || || | |||| | | || | || || | Sbjct 1191772 GCAAAGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGT-TCAGGGTCTTCTC 1191830 Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 |||||| || ||| | || | ||| || || || | |||||||| || ||||| || Sbjct 1191831 CCAATCTCGGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGC 1191890 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244 ||| || ||||| | |||||| | | || ||||||| || || ||| ||||| Sbjct 1191891 CTTCTTGTACATCTCCCAGATCTGAGGAAATTGAATCGGGAACATACAGAATCT 1191944 >seq6695 Length=6602074 Score = 132 bits (146), Expect = 6e-26 Identities = 386/583 (66%), Gaps = 11/583 (2%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| |||||||||||||| || || ||||||| || |||||||| || || || | Sbjct 4468749 ACACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAA 4468690 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 32778 ||| ||||| | || |||||||| |||||||| || | |||| || || || |||| Sbjct 4468689 TCCCGGCATCAACCCCCGCTTTTTTAGCCAAAAAATCG-CGCAGAAACTGCCGGAGAAGA 4468631 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT- 32837 | || ||||| || || ||||| || |||||||| | || | | | | || Sbjct 4468630 AGATCCCTTCGACGCAGGCGAAGGCGATGAGTCTCTCGGC-GAAGCTTTG-AGACCCGTC 4468573 Query 32838 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| || ||||| | |||||||| || ||||| | ||||| || ||| Sbjct 4468572 GATCCATTTCATTGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACG 4468513 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 |||||| | || | | || || ||| || | || ||||| | | ||||| ||||| Sbjct 4468512 AAAGAGGTGGTCTCTCTCTTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACTGTACAT 4468453 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016 ||||| || || || || || || || ||||| ||||||||| | ||||| | | Sbjct 4468452 CTCCGAGTGGATATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGAC 4468393 Query 33017 CTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 33075 ||| || || | ||| || || || | || || ||| || ||||| ||| | Sbjct 4468392 CTGGACATCCG-ACATGAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCCG 4468334 Query 33076 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTT--TATTCC 33132 | || ||||| | || || | || || | ||| | | || | | | | || Sbjct 4468333 CGAAGAACGCGAGCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCATCTCCC 4468274 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 |||| | ||| | || | ||| || || || | ||||||||||| ||||| |||| Sbjct 4468273 AATCGCGAACATCCTGCGACAGATCGACCTCCTCGGCAGTCCAAAATGAAGCCTCGGCCT 4468214 Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 | || ||||| | |||||| | | ||||| || ||||| || Sbjct 4468213 TCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGAAACAT 4468171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633534983020400