Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6695 132 4e-26 seq5186 102 7e-17 seq7521 96.9 3e-15 seq5265 96.9 3e-15 >seq6695 Length=6602074 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || | ||||| || ||||||| ||||||| ||| || Sbjct 809773 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 809832 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || |||| ||| ||| ||||| ||||| ||||| || ||| Sbjct 809833 GACACCATTGA--CAATGTCAAAGC-AAAGATCCAGGACAAGGAAGGAATTCCTCCGGAC 809889 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || |||| |||||||||||||| | || |||| ||||| ||| ||| ||| Sbjct 809890 CAGCAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTAC 809949 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || || | || || || ||||||| || Sbjct 809950 AACATCCAAAAGGAATCGACTCTCCACCTGGTTCTCCGGTTAAGAGGTGG 809999 Score = 127 bits (140), Expect = 2e-24 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || | ||||| || ||||||| ||||||| ||| || Sbjct 804641 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 804700 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || |||| ||| ||| ||||| ||||| || || || ||| Sbjct 804701 GACACCATTGA--CAATGTCAAAGC-AAAGATCCAGGACAAGGAAGGAATCCCTCCGGAC 804757 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || |||| |||||||||||||| | || |||| ||||| ||| ||| ||| Sbjct 804758 CAGCAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTAC 804817 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || || | || || || ||||||| || Sbjct 804818 AACATCCAAAAGGAATCGACTCTCCACCTGGTTCTCCGGTTAAGAGGTGG 804867 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| ||| | ||||| |||| || ||| ||| Sbjct 810229 ATGCAGATCTTCGTGAAGACTCTTACCGGCAAAACGATCACCCTCGAGGTTGAGAGCTCT 810288 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || ||||| ||| ||| ||||| ||||| || || || ||||| Sbjct 810289 GATACCATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 810348 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||| ||||| |||||||| | || || | | || | | ||||||||| Sbjct 810349 CAAAGGCTTATCTTTGCTGGCAAACAGCTCGAGGACGGAAGGACCCTTGCTGATTACAAT 810408 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || ||||| || || Sbjct 810409 ATCCAGAAAGAATCCACTCTCCATTTGGTCCT 810440 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||||||| | ||||||||| | ||||| |||| || || || Sbjct 804869 ATGCAGATCTTCGTAAAGACTCTTACCGGTAAAACGATCACCCTCGAGGTTGAAAGCTCC 804928 Query 25059 GACACTATCGAGTCACTGAA---GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | ||||| | ||| ||||||||||| || || || ||| Sbjct 804929 GACACCATTGA--CAATGTAAAGGCAAAGATTCAA-GACAAAGAAGGAATCCCTCCAGAC 804985 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || ||||| || || || | ||||||| | || | | || ||| Sbjct 804986 CAACAGAGACTCATCTTTGCTGGTAAGCAGCTCGAAGATGGAAGGACCCTTGCTGACTAC 805045 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || || | || || || | ||||| || Sbjct 805046 AACATCCAAAAGGAATCAACTCTCCACCTGGTTCTCCGGTTGAGAGGTGG 805095 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||||||| | ||||||||| | ||||| |||| || || || Sbjct 810001 ATGCAGATCTTCGTAAAGACTCTTACCGGTAAAACGATCACCCTCGAGGTTGAAAGCTCC 810060 Query 25059 GACACTATCGAGTCACTGAA---GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | ||||| | ||| ||||||||||| || || || ||| Sbjct 810061 GACACCATTGA--CAATGTAAAGGCAAAGATTCAA-GACAAAGAAGGAATCCCTCCAGAC 810117 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || ||||| || || || | ||||||| | || | | || ||| Sbjct 810118 CAACAGAGACTCATCTTTGCTGGTAAGCAGCTCGAAGATGGAAGGACCCTTGCTGACTAC 810177 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || || | || || || | ||||| || Sbjct 810178 AACATCCAAAAGGAATCAACTCTCCACCTGGTTCTCCGGTTGAGAGGTGG 810227 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || || ||| |||| || |||| |||||| || Sbjct 811140 AATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATAACTCTCGAGGTGGAGAGCTC 811199 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| || ||| ||||| |||||||| ||||| ||||| Sbjct 811200 GGATACCATTGACAACGTAAAGGCGAAGATCCAGGACAAGGAAGGGATCCCACCCGACCA 811259 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || |||||||| || || | || |||| ||||| | | |||||||| Sbjct 811260 GCAGAGGCTCATCTTTGCCGGGAAGCAGCTGGAGGATGGACGCACCCTAGCTGATTACAA 811319 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| || || ||||| || || || Sbjct 811320 TATCCAGAAGGAATCGACCCTTCA 811343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || |||||| | || || || ||||||| | || || ||| || Sbjct 810913 ATGCAAATATTCGTCAAGACTCTCACAGGAAAGACCATCACTCTAGAGGTTGAGAGCTCG 810972 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || ||||| ||| || ||||| ||||| || || || ||||| Sbjct 810973 GATACCATTGACAATGTGAAGGCAAAGATACAGGACAAGGAAGGAATCCCTCCGGACCAG 811032 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||| || || || | || |||| ||| || ||| |||||||| Sbjct 811033 CAGAGACTCATCTTTGCTGGGAAGCAGCTCGAGGATGGTCGGACCCTGGCTGATTACAAC 811092 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || |||||||| || || Sbjct 811093 ATCCAGAAGGAATCCACCCTCCA 811115 >seq5186 Length=9353477 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | ||||| || | ||||| | || |||||| || Sbjct 4546909 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACGATCACTCTGGAGGTGGAGAGCTCC 4546968 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | || || ||| ||||| ||||||||||| || || || Sbjct 4546969 GACACGATCGAGAATGTCAAAACCAAGATCCAGGACAAGGAAGGGATTCCCCCGGATCAG 4547028 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || ||||| ||||| | ||||||| | || ||| ||||||||| Sbjct 4547029 CAGAGGCTGATCTTCGCCGGAAAACAGCTGGAAGATGGGAGGACACTGGCTGATTACAAT 4547088 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || ||||| ||| | ||||| | || | ||||||| Sbjct 4547089 ATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGCGTCTCCGTGGAGGAA 4547137 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | || || || ||||||| |||| || ||| || Sbjct 4546681 ATGCAAATCTTCGTGAAGACTCTTACTGGAAAGACCATCACGCTCGAGGTTGAGAGCTCG 4546740 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | || || ||| ||||| ||||| ||||| || || || Sbjct 4546741 GACACAATCGAGAATGTCAAATCCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAG 4546800 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || || || |||||||| |||| || || | | || ||||| Sbjct 4546801 CAGAGGTTGATATTCGCGGGGAAGCAATTAGAGGATGGACGAACACTCGCTGACTACAAC 4546860 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || || | || || | || || ||||| Sbjct 4546861 ATCCAGAAAGAATCCACCCTCCACCTTGTCCTCCGTCTCAGGGGAGG 4546907 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | ||||| ||| |||| ||| | || || || || Sbjct 4547136 AATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATAACACTGGAGGTTGAAAGCTC 4547195 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| |||||| ||||| | || | ||| ||||| || || || | || |||| Sbjct 4547196 GGACACGATCGAGAACGTGAAGTCGAAGATTCAG-GACAAGGAGGGAATCTCGCCCGACC 4547254 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| || | || || ||||| || || | ||||||| || ||| || |||||||| Sbjct 4547255 AACAGAGGCTGATATTCGCCGGAAAGCAGCTCGAAGATGGACGAACTCTGTCCGATTACA 4547314 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 |||| || ||||| || || || || Sbjct 4547315 ATATACAGAAAGAGTCGACTCTTCA 4547339 >seq7521 Length=6323785 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| |||| |||||| || Sbjct 4430706 ATGCAGATTTTCGTGAAGACCCTTACTGGGAAGACCATCACCCTCGAGGTGGAGAGCTCG 4430647 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| || ||| |||||||||||||| |||||||||| Sbjct 4430646 GACACTATTGA--CAATGTCAAGGCTAAGATCCAGGACAAAGAAGGGATCCCACCTGACC 4430589 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | || |||||||| || || | || || | | || | | ||||||| Sbjct 4430588 AGCAAAGGCTCATCTTTGCCGGGAAGCAGCTCGAGGACGGAAGAACCCTTGCGGATTACA 4430529 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || || || ||||| || || | ||||| Sbjct 4430528 ATATCCAGAAGGAGTCCACTCTCCACCTCGTGCT 4430495 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || || || | ||||| |||| ||||| || Sbjct 4430934 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACGATCACCCTCGAGGTGGAAAGCTCC 4430875 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| | || | ||| ||||||||||| || ||||| ||||| Sbjct 4430874 GACACCATTGACAATGTGAAGGCCAAGATTCAG-GACAAAGAAGGAATCCCACCCGACCA 4430816 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || |||||||| || || | ||||||| | || | | |||||||| Sbjct 4430815 ACAAAGACTCATCTTTGCCGGGAAGCAGCTGGAAGATGGCAGGACCCTTGCTGATTACAA 4430756 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || || |||||||| || || Sbjct 4430755 CATCCAGAAGGAATCCACCCTCCA 4430732 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || || || ||||||| | || || ||| || Sbjct 4430479 AATGCAGATCTTTGTGAAGACACTCACGGGCAAGACCATCACTCTGGAGGTAGAGAGCTC 4430420 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| || || ||||||| | ||| ||||| || || ||||| || || Sbjct 4430419 GGACACAATCGA--CAATGTGAAAGCAAAGATTCAA-GACAAGGAGGGTATTCCCCCGGA 4430363 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || ||||| || || || | || || | | || | | ||||| Sbjct 4430362 CCAGCAGAGACTCATCTTTGCAGGGAAGCAGCTGGAGGACGGAAGAACCCTAGCGGATTA 4430303 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || ||||| || || ||| | ||||| Sbjct 4430302 CAATATCCAGAAGGAATCAACCCTTCATCTCGTGCT 4430267 >seq5265 Length=2761455 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| || || || |||||||| |||||| || | || ||||| || || ||| ||||| Sbjct 1298951 GACAAGGAGGGCATACCACCTGATCAACAGAGGCTGATATTTGCTGGTAAGCAACTAGAA 1298892 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| || || | | || ||||||||||| ||||| || || || ||| ||||| | Sbjct 1298891 GATGGACGAACCCTAGCAGACTACAATATTCAGAAAGAGTCTACTCTCCATCTAGTGTTG 1298832 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| || || |||| Sbjct 1298831 AGGCTCAGGGGTGGAA 1298816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433263310764935