Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6695 147 2e-30 seq1 95.1 1e-14 seq5186 91.5 2e-13 seq7780 89.7 6e-13 seq5355 87.8 2e-12 seq5265 87.8 2e-12 seq2206 86.0 7e-12 seq4833 84.2 2e-11 seq4936 82.4 8e-11 >seq6695 Length=6602074 Score = 147 bits (162), Expect = 2e-30 Identities = 491/752 (65%), Gaps = 14/752 (2%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| || ||||| || ||||| || |||||| |||| ||||| || | | ||| | Sbjct 4468914 ATCCGCCACAAACTCGATGTATTGGCTCATCAAGTCACGGTTCATCCCCACCA-ACGCGC 4468856 Query 92986 A-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 | || ||||||||| | ||| ||| ||||||| | ||||| || | |||| Sbjct 4468855 ATGGCAGAGCGTCGCATACGAACTCTCTCTCGATGTCGACGGCGTCGCGGACGATTGACT 4468796 Query 93045 TTACTCTACTATTTGGTGGTTTTTGTAC-GACATAATTGTACATTAAGCACGCAAAGTCG 93103 | || | || | ||| || || | || | |||| | | ||||| || ||| Sbjct 4468795 TGACGCG-CTCCTCGGTCAGCTTGGTCCTGAGGAGACTGTATAGGAGACACGCGAAATCG 4468737 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 || | ||||||||||| || ||||| || || ||| ||||| || || | || Sbjct 4468736 CAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGGCATCAAC 4468677 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTCCAC 93222 || || || || |||||||| || | ||| ||||| || || || || || ||||| || Sbjct 4468676 CCCCGCTTTTTTAGCCAAAAAATCG-CGCAGAAACTGCCGGAGAAGAAGATCCCTTCGAC 4468618 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAA 93282 | || || || | | | ||||| || || || | | ||||||||| | Sbjct 4468617 GCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGA---CCCGTCGATCCATTTCAT 4468561 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 ||||| | || || ||| | ||||| | || ||||| || ||| |||| || Sbjct 4468560 TGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACGAAAGAGGTGGTC 4468501 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 || ||| | || ||| ||||| ||||||| | ||| ||||| || || |||| Sbjct 4468500 TCTCTCTTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACTGTACATCTCCGAGTGGAT 4468441 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 |||||| || || || || || |||||||| | || |||| || ||| || || | Sbjct 4468440 ATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGACCTGGACATC-CG 4468382 Query 93463 AGA-AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA 93521 | | || | |||| || || || ||||| || || || || || || || | Sbjct 4468381 ACATGAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCCGCGAAGAACGCGA 4468322 Query 93522 ATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCCAATCGGATAGAT 93578 | || | || || || ||| |||| || || | | ||||||||| | || Sbjct 4468321 GCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCATCTCCCAATCGCGAACAT 4468262 Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 | | || |||||||| || ||| |||||||||| || || || || || |||||||| | Sbjct 4468261 CCTGCGACAGATCGACCTCCTCGGCAGTCCAAAATGAAGCCTCGGCCTTCTTGTACATCT 4468202 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATG 93670 |||| || | | | ||||| || ||||| ||| Sbjct 4468201 CCCAGATCTGTGGGTATTGGATCGGAAACATG 4468170 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/93 (82%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 126258 TATT-TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCC 126314 |||| || ||||||| ||||||||||||||||||||||||| | ||| |||||| || Sbjct 2687572 TATTATAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGT 2687631 Query 126315 TCGGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 | | | |||||||||| || ||||| |||||| Sbjct 2687632 TAGAGGGCGTGGGTTCAAATCCCACTTCTGACA 2687664 >seq1 Length=11827220 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/113 (80%), Gaps = 9/113 (8%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG----G 126319 |||||||| ||||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 3926590 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGGTAGAG 3926533 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAAT---TATTATTGGAATTTTTGTT 126369 |||||||||| || ||||| ||||||||| ||| || ||||||| || Sbjct 3926532 GGCGTGGGTTCAAATCCCACTTCTGACAAATATATATCTTTTCAATTTTTTTT 3926480 >seq5186 Length=9353477 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG----GA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 6696979 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGGTAGAGG 6696922 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| |||||| ||||| || Sbjct 6696921 GCGTGGGTTCAAATCCCACTTCTGACATTTTATTTTT 6696885 Score = 89.7 bits (98), Expect = 6e-13 Identities = 74/89 (83%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG---- 126318 ||||||||| ||||||||||||||||||||||||| | ||| |||||| |||||| Sbjct 585965 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGGTAGA 585908 Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACA 126347 | |||||||||| || ||||| |||||| Sbjct 585907 GGGCGTGGGTTCAAATCCCACTTCTGACA 585879 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 3183946 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 3184003 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||| || ||||| ||||||| || Sbjct 3184004 CGTGGGTTCAAATCCCACTTCTGACAATTT 3184033 >seq7780 Length=791670 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 126261 TTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA 126320 ||| || ||| |||||||||||||||||||||||||||||| | |||||| || | Sbjct 40002 TTAAAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGG 40059 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||||||| || |||||| ||| || ||||| Sbjct 40060 GCGTGGGTTCAAATCCCACAGCTGTCACATTAT 40092 >seq5355 Length=2579661 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG----GA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 1739969 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGGTAGAGG 1740026 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 1740027 GCGTGGGTTCAAATCCCACTTCTGACAA 1740054 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| || | | | || Sbjct 1748052 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTTAGAGGGC 1747993 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| || ||||| ||||||| Sbjct 1747992 GTGGGTTCAAATCCCACTTCTGACAA 1747967 >seq5265 Length=2761455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 1468435 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 1468378 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 1468377 GCGTGGGTTCAAATCCCACTTCTGACAA 1468350 >seq2206 Length=3909247 Score = 86.0 bits (94), Expect = 7e-12 Identities = 78/96 (81%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| || | | | || Sbjct 1410113 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTTAGAGGGC 1410172 Query 126323 GTGGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 |||||||| || ||||| ||||||| || ||||| Sbjct 1410173 GTGGGTTCAAATCCCACTTCTGACAACCTTTTTATT 1410208 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 73455 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 73398 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| || || ||| || Sbjct 73397 GGGTTCAAATCCCACAGCTGTCATATAATTTTT 73365 >seq4833 Length=3074427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG----GAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||||| | | Sbjct 919136 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGGTAGAGGG 919079 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 919078 CGTGGGTTCAAATCCCACTTCTGACA 919053 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 2035083 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2035026 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 2035025 TTCAAATCCCACAGCTGTCAATTT 2035002 >seq4936 Length=3062365 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 1586060 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1586117 Query 126328 TTCGAACCCCACACCTGACAA-ATTATTATT 126357 ||| || |||||| ||| ||| ||| |||| Sbjct 1586118 TTCAAATCCCACAGCTGTCAATATTCCTATT 1586148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556775537650760