Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq7521 87.8 1e-12 seq6695 86.0 4e-12 seq5265 82.4 5e-11 >seq7521 Length=6323785 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || ||| | |||||||| ||||| || |||| || | | Sbjct 4430479 AATGCAGATCTTTGTGAAGACACTCACGGGCAAGACCATCACTCTGGAGGTAGAGAGCTC 4430420 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | || ||| ||| || || |||||| | || |||| Sbjct 4430419 GGACACAATCGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCGGACCA 4430360 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||||| |||||||| || || || || || || || ||| | || |||||||| Sbjct 4430359 GCAGAGACTCATCTTTGCAGGGAAGCAGCTGGAGGACGGAAGAACCCTAGCGGATTACAA 4430300 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| ||||||||||| || |||||| | || | ||| | || || || Sbjct 4430299 TATCCAGAAGGAATCAACCCTTCATCTCGTGCTCCGTCTCCGTGGTGG 4430252 >seq6695 Length=6602074 Score = 86.0 bits (94), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 ||||||||||||| ||||||||||||||||| || || ||| | ||| | || || | Sbjct 810572 ACCAACAGAGACTCATCTTTGCTGGCAAACAGCTGGAGGATGGACGAACCCTTGCTGACT 810631 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||| ||||||||||| || || || |||| | ||| | || || || Sbjct 810632 ACAATATCCAGAAGGAATCCACCCTCCACCTGGTTCTCCGTCTTCGCGGTGG 810683 >seq5265 Length=2761455 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 |||||||| || || |||||||| || |||||||||||| | ||| | || || ||| Sbjct 1298927 CAACAGAGGCTGATATTTGCTGGTAAGCAACTAGAAGATGGACGAACCCTAGCAGACTAC 1298868 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||||| || |||||||| ||| | || || Sbjct 1298867 AATATTCAGAAAGAGTCTACTCTCCATCTAGTGTT 1298833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358071337451146