Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6695 228 2e-54 seq1104 221 2e-52 >seq6695 Length=6602074 Score = 228 bits (252), Expect = 2e-54 Identities = 491/728 (67%), Gaps = 16/728 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || |||||||| ||||| ||||| || || |||||||| || | |||||||| Sbjct 4468321 CTCGCGTTCTTCGCGGCCTCGGACGGTATCGTGTTGGAGAACCTCGCTTCTCGGTTCATG 4468380 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| || ||||||||| |||||||||||| ||||| || || ||||| Sbjct 4468381 TCGGATGTCCAGGTCTCGGAGGCGCGCGCCTTCTACGGCTTTCAGATCGCGATCGAGAAT 4468440 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| ||| ||| | || |||||| |||| | ||| | Sbjct 4468441 ATCCACTCGGAGATGTACAGTCTACTCCTCGATACCTACATCAAGGATGCGAAAGAGAGA 4468500 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || || || ||||| ||||| | || ||| || |||||||||| | ||||| Sbjct 4468501 GACCACCTCTTTCGTGCCATCGAGACCGTCCCTTGCGTCGCGAAGAAGGCGCAGTGGGCA 4468560 Query 42663 CTCAACTGGATCGA-GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | || |||||||| | ||| | | || |||| |||||| || | ||||| || Sbjct 4468561 ATGAAATGGATCGACGGGTCTCAAAGC----TTCGCCGAGAGACTCATCGCCTTCGCCTG 4468616 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 |||||| || ||||||||||| ||| ||| | | || || ||||| || || || Sbjct 4468617 CGTCGAAGGGATCTTCTTCTCCGGCAGTTTCTGCGCGATTTTTTGGCTAAAAAAGCGGGG 4468676 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || |||||| ||| | || |||||||||||| | ||| | ||||| || || || | Sbjct 4468677 GTTGATGCCGGGATTAACTTTCTCGAACGAATTGATCTCGCGAGACGAAGGCCTCCACTG 4468736 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 || || || || ||||| | | || | ||||||| ||||| | ||||||| || Sbjct 4468737 CGATTTCGCGTGTCTCCTATAC---AGTCTCCTCAGGACCAAGCTGACCGAGGAGCGCGT 4468793 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC-AGTCGCTGC 42960 | | | ||| || || ||||| || ||||||| |||||| | | || | | |||| Sbjct 4468794 CAAGTCAATCGTCCGCGACGCCGTCGACATCGAGAGAGAGTTCGT-ATGCGACGCTCTGC 4468852 Query 42961 C---CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 | || || |||| || ||||||| ||| | ||| || | |||||| ||| || | Sbjct 4468853 CATGCGCGT---TGGTGGGGATGAACCGTGACTTGATGAGCCAATACATCGAGTTTGTGG 4468909 Query 43018 CCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCG 43077 | || | || ||| | | | || | | | ||| ||| || || | Sbjct 4468910 CGGATCGGCTGCTGGGTGCGCTTGGGTACGGTAAGGTGTACGGTGTGCCAAATCCATTTG 4468969 Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCG 43137 | | |||||| || ||| | |||| ||||||||||| ||||||||||| |||| || Sbjct 4468970 ATTGGATGGAGCTGATATCGCTACAGGGGAAGACCAACTTCTTCGAGAAGCGGGTCGGCG 4469029 Query 43138 ACTACCAG 43145 | || ||| Sbjct 4469030 AGTATCAG 4469037 >seq1104 Length=4098138 Score = 221 bits (244), Expect = 2e-52 Identities = 568/856 (66%), Gaps = 23/856 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||||||||| | || ||| Sbjct 1191911 ATCTGGGAGATGTACAAGAAGGCTGAGGCCTCGTTTTGGACCGCCGAGGAGGTCGATCTG 1191852 Query 42360 GCCAAGGACACGGCCGGC--TGGGAGT---CACTGTCTGAGAACGAAAAGTTTTTCCTCA 42414 | |||| | ||| |||||| | ||| || |||| | ||| ||| Sbjct 1191851 TCGCAGGAT--GTCCGAGATTGGGAGAAGACCCTGAACGACGGCGAACGGCACTTCATCA 1191794 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 | | || || ||||| |||||||| ||||| || || |||||||| || || Sbjct 1191793 CCCATGTCCTCGCTTTCTTTGCCGCCTCCGACGGTATTGTGTTGGAGAACCTCGCTTCCC 1191734 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCC 42533 |||||||| || || ||| | |||||||| ||| ||||||||||||||||| || Sbjct 1191733 GGTTCATGTCCGATGTTCAGGTCGCGGAGGCGCG-TGCATTCTACGGCTTCCAGATCGCG 1191675 Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCC 42593 || |||||| | || || ||| ||||| || ||| |||| ||||| ||| | Sbjct 1191674 ATCGAGAACATCCATTCGGAGATGTACAGTCTCCTCCTCGACACCTACATAAAGGACGCG 1191615 Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653 ||| | || || || ||||| ||||| || || ||| || |||||||| Sbjct 1191614 AAGGAGAGAGACCACCTTTTTCGCGCCATCGAGACCATTCCTTGCGTCGCCAAGAAGGCA 1191555 Query 42654 GACTGGGCGCTCAACTGGATCGA-GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 | |||||| | || |||||||| | ||| | || |||| |||||| || | || Sbjct 1191554 CAGTGGGCGATGAAATGGATCGACGGGTCTCAGAGC----TTCGCCGAGAGACTCATCGC 1191499 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 ||| || ||| || || ||||||||||| ||| |||| | | || || ||||| || Sbjct 1191498 CTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGCAGCTTCTGCGCGATATTTTGGCTGAA 1191439 Query 42773 GCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGG 42832 || | || ||||| ||| | || ||||||||||| | ||| | ||||| || Sbjct 1191438 AAAGCGCGGGTTAATGCCGGGATTAACTTTCTCGAACGAGTTGATCTCGCGAGACGAAGG 1191379 Query 42833 GCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAA 42892 || || | || || || ||||||| ||| || | ||||||| |||||| | || | Sbjct 1191378 CCTCCACTGCGATTTCGCGTGCCTCC---TCTACAGTCTCCTCAGGAACAAGCTCACGGA 1191322 Query 42893 GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCA 42952 |||||| || | | ||| | || || || || ||||||| ||||||| || | Sbjct 1191321 GGAGCGCGTGAAGTCAATCGTGCGTGACGCAGTCGACATCGAGAGGGAGTTCGTCTGCGA 1191262 Query 42953 GTCGCTGCC---CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 |||| || || || |||| |||||||||| ||||| ||| | | |||||| | Sbjct 1191261 CGCGCTTCCATGCGCGT---TGGTGGGCATGAACCGTGACCTGATGGGTCAATACATCGA 1191205 Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTG 43069 || ||| || || | | ||| | | | || | || | ||| || Sbjct 1191204 GTTCGTGGCGGATCGGTTGCTGGGTGCGCTCGGGTGCGGCAAGGTGTACGGTGTAACGAA 1191145 Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 || || || | ||||| |||||| || |||| ||||||||||||||||||||| | Sbjct 1191144 TCCATTTGATTGGATGGAACTGATCTCGCTGCAGGGGAAGACCAACTTTTTCGAGAAGAG 1191085 Query 43130 CGTCGCCGACTACCAG 43145 || | || |||||| Sbjct 1191084 GGTTGGAGAGTACCAG 1191069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944194609864240