Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq6695 228 2e-54
seq1104 221 2e-52
>seq6695
Length=6602074
Score = 228 bits (252), Expect = 2e-54
Identities = 491/728 (67%), Gaps = 16/728 (2%)
Strand=Plus/Plus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| || |||||||| ||||| ||||| || || |||||||| || | ||||||||
Sbjct 4468321 CTCGCGTTCTTCGCGGCCTCGGACGGTATCGTGTTGGAGAACCTCGCTTCTCGGTTCATG 4468380
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
|| || ||| || ||||||||| |||||||||||| ||||| || || |||||
Sbjct 4468381 TCGGATGTCCAGGTCTCGGAGGCGCGCGCCTTCTACGGCTTTCAGATCGCGATCGAGAAT 4468440
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602
| ||||| ||| ||||| ||| ||| | || |||||| |||| | ||| |
Sbjct 4468441 ATCCACTCGGAGATGTACAGTCTACTCCTCGATACCTACATCAAGGATGCGAAAGAGAGA 4468500
Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662
|| || || ||||| ||||| | || ||| || |||||||||| | |||||
Sbjct 4468501 GACCACCTCTTTCGTGCCATCGAGACCGTCCCTTGCGTCGCGAAGAAGGCGCAGTGGGCA 4468560
Query 42663 CTCAACTGGATCGA-GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721
| || |||||||| | ||| | | || |||| |||||| || | ||||| ||
Sbjct 4468561 ATGAAATGGATCGACGGGTCTCAAAGC----TTCGCCGAGAGACTCATCGCCTTCGCCTG 4468616
Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781
|||||| || ||||||||||| ||| ||| | | || || ||||| || || ||
Sbjct 4468617 CGTCGAAGGGATCTTCTTCTCCGGCAGTTTCTGCGCGATTTTTTGGCTAAAAAAGCGGGG 4468676
Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841
|| |||||| ||| | || |||||||||||| | ||| | ||||| || || || |
Sbjct 4468677 GTTGATGCCGGGATTAACTTTCTCGAACGAATTGATCTCGCGAGACGAAGGCCTCCACTG 4468736
Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901
|| || || || ||||| | | || | ||||||| ||||| | ||||||| ||
Sbjct 4468737 CGATTTCGCGTGTCTCCTATAC---AGTCTCCTCAGGACCAAGCTGACCGAGGAGCGCGT 4468793
Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC-AGTCGCTGC 42960
| | | ||| || || ||||| || ||||||| |||||| | | || | | ||||
Sbjct 4468794 CAAGTCAATCGTCCGCGACGCCGTCGACATCGAGAGAGAGTTCGT-ATGCGACGCTCTGC 4468852
Query 42961 C---CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017
| || || |||| || ||||||| ||| | ||| || | |||||| ||| || |
Sbjct 4468853 CATGCGCGT---TGGTGGGGATGAACCGTGACTTGATGAGCCAATACATCGAGTTTGTGG 4468909
Query 43018 CCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCG 43077
| || | || ||| | | | || | | | ||| ||| || || |
Sbjct 4468910 CGGATCGGCTGCTGGGTGCGCTTGGGTACGGTAAGGTGTACGGTGTGCCAAATCCATTTG 4468969
Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCG 43137
| | |||||| || ||| | |||| ||||||||||| ||||||||||| |||| ||
Sbjct 4468970 ATTGGATGGAGCTGATATCGCTACAGGGGAAGACCAACTTCTTCGAGAAGCGGGTCGGCG 4469029
Query 43138 ACTACCAG 43145
| || |||
Sbjct 4469030 AGTATCAG 4469037
>seq1104
Length=4098138
Score = 221 bits (244), Expect = 2e-52
Identities = 568/856 (66%), Gaps = 23/856 (3%)
Strand=Plus/Minus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||||||||| || ||| ||||||||||||||| | || |||
Sbjct 1191911 ATCTGGGAGATGTACAAGAAGGCTGAGGCCTCGTTTTGGACCGCCGAGGAGGTCGATCTG 1191852
Query 42360 GCCAAGGACACGGCCGGC--TGGGAGT---CACTGTCTGAGAACGAAAAGTTTTTCCTCA 42414
| |||| | ||| |||||| | ||| || |||| | ||| |||
Sbjct 1191851 TCGCAGGAT--GTCCGAGATTGGGAGAAGACCCTGAACGACGGCGAACGGCACTTCATCA 1191794
Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474
| | || || ||||| |||||||| ||||| || || |||||||| || ||
Sbjct 1191793 CCCATGTCCTCGCTTTCTTTGCCGCCTCCGACGGTATTGTGTTGGAGAACCTCGCTTCCC 1191734
Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCC 42533
|||||||| || || ||| | |||||||| ||| ||||||||||||||||| ||
Sbjct 1191733 GGTTCATGTCCGATGTTCAGGTCGCGGAGGCGCG-TGCATTCTACGGCTTCCAGATCGCG 1191675
Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCC 42593
|| |||||| | || || ||| ||||| || ||| |||| ||||| ||| |
Sbjct 1191674 ATCGAGAACATCCATTCGGAGATGTACAGTCTCCTCCTCGACACCTACATAAAGGACGCG 1191615
Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653
||| | || || || ||||| ||||| || || ||| || ||||||||
Sbjct 1191614 AAGGAGAGAGACCACCTTTTTCGCGCCATCGAGACCATTCCTTGCGTCGCCAAGAAGGCA 1191555
Query 42654 GACTGGGCGCTCAACTGGATCGA-GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712
| |||||| | || |||||||| | ||| | || |||| |||||| || | ||
Sbjct 1191554 CAGTGGGCGATGAAATGGATCGACGGGTCTCAGAGC----TTCGCCGAGAGACTCATCGC 1191499
Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772
||| || ||| || || ||||||||||| ||| |||| | | || || ||||| ||
Sbjct 1191498 CTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGCAGCTTCTGCGCGATATTTTGGCTGAA 1191439
Query 42773 GCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGG 42832
|| | || ||||| ||| | || ||||||||||| | ||| | ||||| ||
Sbjct 1191438 AAAGCGCGGGTTAATGCCGGGATTAACTTTCTCGAACGAGTTGATCTCGCGAGACGAAGG 1191379
Query 42833 GCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAA 42892
|| || | || || || ||||||| ||| || | ||||||| |||||| | || |
Sbjct 1191378 CCTCCACTGCGATTTCGCGTGCCTCC---TCTACAGTCTCCTCAGGAACAAGCTCACGGA 1191322
Query 42893 GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCA 42952
|||||| || | | ||| | || || || || ||||||| ||||||| || |
Sbjct 1191321 GGAGCGCGTGAAGTCAATCGTGCGTGACGCAGTCGACATCGAGAGGGAGTTCGTCTGCGA 1191262
Query 42953 GTCGCTGCC---CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009
|||| || || || |||| |||||||||| ||||| ||| | | |||||| |
Sbjct 1191261 CGCGCTTCCATGCGCGT---TGGTGGGCATGAACCGTGACCTGATGGGTCAATACATCGA 1191205
Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTG 43069
|| ||| || || | | ||| | | | || | || | ||| ||
Sbjct 1191204 GTTCGTGGCGGATCGGTTGCTGGGTGCGCTCGGGTGCGGCAAGGTGTACGGTGTAACGAA 1191145
Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129
|| || || | ||||| |||||| || |||| ||||||||||||||||||||| |
Sbjct 1191144 TCCATTTGATTGGATGGAACTGATCTCGCTGCAGGGGAAGACCAACTTTTTCGAGAAGAG 1191085
Query 43130 CGTCGCCGACTACCAG 43145
|| | || ||||||
Sbjct 1191084 GGTTGGAGAGTACCAG 1191069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944194609864240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |