Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq6695 127 5e-24
>seq6695
Length=6602074
Score = 127 bits (140), Expect = 5e-24
Identities = 578/889 (65%), Gaps = 38/889 (4%)
Strand=Plus/Plus
Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926
||||||| | || ||||| || || | || ||||| ||||| |||||||| | |||
Sbjct 4468166 TCTGCATGTTTCCGATCCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGAGGCTT 4468225
Query 242927 CCTTTTGGACCACCGAGGAAGTTCCTCTGAACGCAG-ACGTCGTCGACTGGCGCGA-GAA 242984
| |||||||| ||||||| || |||| ||||| | || ||| ||| | || ||
Sbjct 4468226 CATTTTGGACTGCCGAGGAGGTCGATCTGT-CGCAGGATGTTCGCGATTGG-GAGATGAC 4468283
Query 242985 ACTCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGA 243044
|| || || | ||||| || ||||||| ||| | || | || ||||| | ||| ||
Sbjct 4468284 CCTGAACGATGGTGAACGCCACTTCATCACCCACGTGCTCGCGTTCTTCGCGGCCTCGGA 4468343
Query 243045 TGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGG 243103
||||| ||| |||| || || | || | ||| ||| || ||| | ||||
Sbjct 4468344 CGGTATCGTGTTGGAGAACCTCGCTTCTCGGTTCA-TGTCGGATGTCCAGGTCTCGGAGG 4468402
Query 243104 CACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTC 243163
| || || || | | || | | ||| |||||| || || || ||
Sbjct 4468403 CGCGCGCCTTCTACGGCTTTCAGATCGCGATCGAGAATATCCACTCGGAGATGTACAGTC 4468462
Query 243164 TTCTTATCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCT-TTTCGACGCCA 243220
| || |||| | || ||| |||| ||||| || || | || ||||| ||||
Sbjct 4468463 TACTCCTCGATACC--TACATCAAGGATGCGAAAGAGAGAGACCACCTCTTTCGT-GCCA 4468519
Query 243221 TCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCG 243280
|||| | | | || || || ||||| | ||||| ||| ||| | || | |
Sbjct 4468520 TCGAGACCGTCCCTTGCGTCGCGAAGAAGGCGCAGTGGGCAATGAAATGGATCGA--CGG 4468577
Query 243281 GT---AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTT 243337
|| ||| | || || ||| | ||| |||||| | ||||| ||||| || | || |
Sbjct 4468578 GTCTCAAAGC-TTCGCCGAGAGACTCATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCT 4468636
Query 243338 CCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTG----TGATGCCTGGCCTC 243393
|||| ||||||||||| || |||||||| || |||| | ||||||| || |
Sbjct 4468637 CCGGCAGTTTCTGCGCGATTTTTTGGCT----AAAAAAGCGGGGGTTGATGCCGGGATTA 4468692
Query 243394 GGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAG-C 243451
| | || ||||| || ||| || ||||| ||||| ||| | |||| ||| |
Sbjct 4468693 ACTTTCTCGAACGAATTGATCTCGCGAGACGAAGGCCTCCACTGCGATTTCGCGTGTCTC 4468752
Query 243452 TTATGTATTCAAAGCTCCAGAACAAGCT-ACCATTCGAAACG-GTCAAACAAATCATCAC 243509
||| | || ||| || |||||| ||| | | || ||||| |||| ||
Sbjct 4468753 CTATACAGTCTC--CTCAGGACCAAGCTGACCGA--GGAGCGCGTCAAGTCAATCGTCCG 4468808
Query 243510 AGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGG 243569
|| || || || | ||| | || ||| | ||||||||| | |||||| | | | ||
Sbjct 4468809 CGACGCCGTCGACATCGAGAGAGAGTTCGTATGCGACGCTCTGCCATGCGCGTTGGTGGG 4468868
Query 243570 CATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGC 243629
|||||| ||| | ||| | || |||||||| || || || || || | | ||
Sbjct 4468869 GATGAACCGTGACTTGATGAGCCAATACATCGAGTTTGTGGCGGATCGGCTGCTGGGTGC 4468928
Query 243630 GCTTGGTTATGAGAAAGTGTACAAC-TCCAAGAACCCCTTTGCCTTTATGGAGCTCATTT 243688
|||||| || | || |||||| | | | || || |||| | |||||||| || |
Sbjct 4468929 GCTTGGGTACGGTAAGGTGTACGGTGTGCCA-AATCCATTTGATTGGATGGAGCTGATAT 4468987
Query 243689 CGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737
|||| || ||||| || ||||||||||| ||||| ||| | || |||||
Sbjct 4468988 CGCTACAGGGGAAGACCAACTTCTTCGAGAAGCGGGTCGGCGAGTATCA 4469036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102706913668150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |