Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6695 127 5e-24 >seq6695 Length=6602074 Score = 127 bits (140), Expect = 5e-24 Identities = 578/889 (65%), Gaps = 38/889 (4%) Strand=Plus/Plus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| | || ||||| || || | || ||||| ||||| |||||||| | ||| Sbjct 4468166 TCTGCATGTTTCCGATCCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGAGGCTT 4468225 Query 242927 CCTTTTGGACCACCGAGGAAGTTCCTCTGAACGCAG-ACGTCGTCGACTGGCGCGA-GAA 242984 | |||||||| ||||||| || |||| ||||| | || ||| ||| | || || Sbjct 4468226 CATTTTGGACTGCCGAGGAGGTCGATCTGT-CGCAGGATGTTCGCGATTGG-GAGATGAC 4468283 Query 242985 ACTCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGA 243044 || || || | ||||| || ||||||| ||| | || | || ||||| | ||| || Sbjct 4468284 CCTGAACGATGGTGAACGCCACTTCATCACCCACGTGCTCGCGTTCTTCGCGGCCTCGGA 4468343 Query 243045 TGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGG 243103 ||||| ||| |||| || || | || | ||| ||| || ||| | |||| Sbjct 4468344 CGGTATCGTGTTGGAGAACCTCGCTTCTCGGTTCA-TGTCGGATGTCCAGGTCTCGGAGG 4468402 Query 243104 CACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTC 243163 | || || || | | || | | ||| |||||| || || || || Sbjct 4468403 CGCGCGCCTTCTACGGCTTTCAGATCGCGATCGAGAATATCCACTCGGAGATGTACAGTC 4468462 Query 243164 TTCTTATCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCT-TTTCGACGCCA 243220 | || |||| | || ||| |||| ||||| || || | || ||||| |||| Sbjct 4468463 TACTCCTCGATACC--TACATCAAGGATGCGAAAGAGAGAGACCACCTCTTTCGT-GCCA 4468519 Query 243221 TCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCG 243280 |||| | | | || || || ||||| | ||||| ||| ||| | || | | Sbjct 4468520 TCGAGACCGTCCCTTGCGTCGCGAAGAAGGCGCAGTGGGCAATGAAATGGATCGA--CGG 4468577 Query 243281 GT---AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTT 243337 || ||| | || || ||| | ||| |||||| | ||||| ||||| || | || | Sbjct 4468578 GTCTCAAAGC-TTCGCCGAGAGACTCATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCT 4468636 Query 243338 CCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTG----TGATGCCTGGCCTC 243393 |||| ||||||||||| || |||||||| || |||| | ||||||| || | Sbjct 4468637 CCGGCAGTTTCTGCGCGATTTTTTGGCT----AAAAAAGCGGGGGTTGATGCCGGGATTA 4468692 Query 243394 GGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAG-C 243451 | | || ||||| || ||| || ||||| ||||| ||| | |||| ||| | Sbjct 4468693 ACTTTCTCGAACGAATTGATCTCGCGAGACGAAGGCCTCCACTGCGATTTCGCGTGTCTC 4468752 Query 243452 TTATGTATTCAAAGCTCCAGAACAAGCT-ACCATTCGAAACG-GTCAAACAAATCATCAC 243509 ||| | || ||| || |||||| ||| | | || ||||| |||| || Sbjct 4468753 CTATACAGTCTC--CTCAGGACCAAGCTGACCGA--GGAGCGCGTCAAGTCAATCGTCCG 4468808 Query 243510 AGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGG 243569 || || || || | ||| | || ||| | ||||||||| | |||||| | | | || Sbjct 4468809 CGACGCCGTCGACATCGAGAGAGAGTTCGTATGCGACGCTCTGCCATGCGCGTTGGTGGG 4468868 Query 243570 CATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGC 243629 |||||| ||| | ||| | || |||||||| || || || || || | | || Sbjct 4468869 GATGAACCGTGACTTGATGAGCCAATACATCGAGTTTGTGGCGGATCGGCTGCTGGGTGC 4468928 Query 243630 GCTTGGTTATGAGAAAGTGTACAAC-TCCAAGAACCCCTTTGCCTTTATGGAGCTCATTT 243688 |||||| || | || |||||| | | | || || |||| | |||||||| || | Sbjct 4468929 GCTTGGGTACGGTAAGGTGTACGGTGTGCCA-AATCCATTTGATTGGATGGAGCTGATAT 4468987 Query 243689 CGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||| || ||||| || ||||||||||| ||||| ||| | || ||||| Sbjct 4468988 CGCTACAGGGGAAGACCAACTTCTTCGAGAAGCGGGTCGGCGAGTATCA 4469036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102706913668150