Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq6695 156 5e-33
seq1104 138 1e-27
seq6273 125 9e-24
>seq6695
Length=6602074
Score = 156 bits (172), Expect = 5e-33
Identities = 345/512 (67%), Gaps = 14/512 (3%)
Strand=Plus/Minus
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
|||||| || ||||| || ||||| | ||| |||||||| | ||| ||||| | ||
Sbjct 4468734 GTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGGCATCAACCC 4468675
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
|||||| || | ||| |||||||| || || || ||||||||||| || || || ||
Sbjct 4468674 CCGCTTTTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAGATCCCTTCGACGCA 4468615
Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237
||||| || | ||| | ||| || ||| | ||| ||| | ||| ||||| ||
Sbjct 4468614 GGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGAC---CCGTCGATCCATTTCATTGC 4468558
Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297
|||||||||||| ||| ||| || |||||||||| ||| || |||||| | | |
Sbjct 4468557 CCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACGAAAGAGGTGGTCTCT 4468498
Query 126298 TTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC--GTGGACC 126355
||| | ||| |||||||| |||| | ||| | || | | || || |||||
Sbjct 4468497 CTCTTTCGCATCCTTGATGTAGGTATCGAGGAG--TAGACTGTACATCTCCGAGTGGATA 4468440
Query 126356 ATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 126415
| || | | |||| | ||||||| | |||||| || | ||| || || ||
Sbjct 4468439 TTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGACCTGGACATC--CG 4468382
Query 126416 GCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 126473
|| || | || ||||| || || || || || || | || || ||||| |
Sbjct 4468381 ACATGAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCCGCGAAGAACGCGA 4468322
Query 126474 GGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGG---TCTTCCAGTCGTCAAGAT 126530
| | | | ||||| | ||||| |||||||||| ||| ||| ||| || ||
Sbjct 4468321 GCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCATCTCCCAATCGCGAACAT 4468262
Query 126531 CCTTCGAGAGATCTACCTCCTCCGCAGTCCAA 126562
||| ||| ||||| |||||||| |||||||||
Sbjct 4468261 CCTGCGACAGATCGACCTCCTCGGCAGTCCAA 4468230
>seq1104
Length=4098138
Score = 138 bits (152), Expect = 1e-27
Identities = 530/818 (65%), Gaps = 26/818 (3%)
Strand=Plus/Plus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
||| || ||||||| ||||||||| ||||| |||||||| | || ||| |||||
Sbjct 1191072 GTACTCTCCAACCCTCTTCTCGAAAAAGTTGGTCTTCCCCTGCAGCGAGATCAGTTCCAT 1191131
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGAC 125876
|||||||||| ||| || | | | ||| | | ||| | | || | |
Sbjct 1191132 CCAATCAAATGGATTCGTT-ACACCGTACACCTTGCCGCACCCGAGCGCACCCAGCAACC 1191190
Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936
|||||| ||| |||| ||||| | | |||| ||| |||||| || | | |
Sbjct 1191191 GATCCGCCACGAACTCGATGTATTGACCCATCAGGTCACGGTTCATGCCCACCAACGCGC 1191250
Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996
|||| |||||||| ||| |||| || |||| || || || || || |||||||| | |
Sbjct 1191251 ATGGAAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACTGCGTCACGCACGATTGACT 1191310
Query 125997 GAATGGTGTCCACCCCAGGTCTATTGC---GCAAAGTCTTGAAGAGTTCCACGGCAAACT 126053
| | ||| || | | || | | | | | | || ||| |||| ||| |
Sbjct 1191311 TCACGCGCTCCTCCGTGAGCTTGTTCCTGAGGAGACTGTAGAGGAGG--CACGCGAAA-T 1191367
Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113
| |||||| || ||||| || ||||| | || |||||||| | ||| ||||| |
Sbjct 1191368 CGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAATCCCGGCATTA 1191427
Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173
|| ||||| |||| ||| || ||||| || || || ||||||||||| || || |
Sbjct 1191428 ACCCGCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAGATCCCTTCAA 1191487
Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCA 126233
| || ||||| || | ||| | ||| || ||| | ||| ||| | ||| ||||
Sbjct 1191488 CGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGAC---CCGTCGATCCATTTCA 1191544
Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 126293
|||||||||| ||||| || ||| || || | ||||| ||| || ||| || | |
Sbjct 1191545 TCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCGAAAAAGGTGGT 1191604
Query 126294 -TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCG--T 126350
||| | || | || || ||||| | || | ||| || | | || ||| |
Sbjct 1191605 CTCTCTCCT-TCGCGTCCTTTATGTAGGTGTCGAGGAG--GAGACTGTACATCTCCGAAT 1191661
Query 126351 GGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCT 126410
||| | || | | ||| | ||||||| | ||||| || | ||| |
Sbjct 1191662 GGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGACCTGAA--- 1191718
Query 126411 CATCGG-CA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAA 126467
|||||| || || | | || ||||| || ||||| || ||||| | ||||| |
Sbjct 1191719 CATCGGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCGGCAAAGA 1191778
Query 126468 ACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTT---CCAGTCGT 126524
| || |||| || | ||||| | | |||| |||||||||||||| ||| ||
Sbjct 1191779 AAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGTTCAGGGTCTTCTCCCAATCTC 1191838
Query 126525 CAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAA 126562
| ||||| ||| ||||| |||||||| || ||||||
Sbjct 1191839 GGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAA 1191876
>seq6273
Length=1470056
Score = 125 bits (138), Expect = 9e-24
Identities = 205/291 (70%), Gaps = 12/291 (4%)
Strand=Plus/Minus
Query 8649 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCA 8708
|||||||||||| |||| ||||| || || ||| ||||||||| |||||||||||||||
Sbjct 522083 AATTACCGAGAAGCCTACGGTCTATTCGCCTGCAACGGTATTCTGTTCAACCACGAGTCA 522024
Query 8709 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-----CGATGGTATCAAACAAA 8763
|| ||||| ||| | | |||||||| ||| || || || ||| | | |||
Sbjct 522023 CCGCGTCGGGGCGAGAACTTCGTGACTCGGAAAATAACTCGGGCGGTGGGACGGATCAA- 521965
Query 8764 TCGTCGCGGGTG-AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 8822
| | | || || || || | ||| |||| |||||| | || ||||||||||
Sbjct 521964 --GGTGGGATTGCAGCGGAAGCT-ATT--CCTGGGAAACCTCCAGGCATCGAGGGACTGG 521910
Query 8823 GGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGAC 8882
||| ||| |||||| || || || |||||||| | || || || || ||||||||
Sbjct 521909 GGATTCGCGGGGGACTACGTGGAGGCAATGTGGCTGATGCTGCAGCAGGAGAAGGCGGAC 521850
Query 8883 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 8933
|| || || || ||||| | |||| | ||| | || ||| ||| | |||
Sbjct 521849 GATTACGTGGTGGCGACAGAGGAGTCGCACACAGTGGAGGAATTCCTGGAG 521799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597262137696920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |