Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6695 156 5e-33 seq1104 138 1e-27 seq6273 125 9e-24 >seq6695 Length=6602074 Score = 156 bits (172), Expect = 5e-33 Identities = 345/512 (67%), Gaps = 14/512 (3%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| || ||||| || ||||| | ||| |||||||| | ||| ||||| | || Sbjct 4468734 GTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGGCATCAACCC 4468675 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||| || | ||| |||||||| || || || ||||||||||| || || || || Sbjct 4468674 CCGCTTTTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAGATCCCTTCGACGCA 4468615 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 ||||| || | ||| | ||| || ||| | ||| ||| | ||| ||||| || Sbjct 4468614 GGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGAC---CCGTCGATCCATTTCATTGC 4468558 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 |||||||||||| ||| ||| || |||||||||| ||| || |||||| | | | Sbjct 4468557 CCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACGAAAGAGGTGGTCTCT 4468498 Query 126298 TTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC--GTGGACC 126355 ||| | ||| |||||||| |||| | ||| | || | | || || ||||| Sbjct 4468497 CTCTTTCGCATCCTTGATGTAGGTATCGAGGAG--TAGACTGTACATCTCCGAGTGGATA 4468440 Query 126356 ATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 126415 | || | | |||| | ||||||| | |||||| || | ||| || || || Sbjct 4468439 TTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGACCTGGACATC--CG 4468382 Query 126416 GCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 126473 || || | || ||||| || || || || || || | || || ||||| | Sbjct 4468381 ACATGAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCCGCGAAGAACGCGA 4468322 Query 126474 GGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGG---TCTTCCAGTCGTCAAGAT 126530 | | | | ||||| | ||||| |||||||||| ||| ||| ||| || || Sbjct 4468321 GCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCATCTCCCAATCGCGAACAT 4468262 Query 126531 CCTTCGAGAGATCTACCTCCTCCGCAGTCCAA 126562 ||| ||| ||||| |||||||| ||||||||| Sbjct 4468261 CCTGCGACAGATCGACCTCCTCGGCAGTCCAA 4468230 >seq1104 Length=4098138 Score = 138 bits (152), Expect = 1e-27 Identities = 530/818 (65%), Gaps = 26/818 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || ||||||| ||||||||| ||||| |||||||| | || ||| ||||| Sbjct 1191072 GTACTCTCCAACCCTCTTCTCGAAAAAGTTGGTCTTCCCCTGCAGCGAGATCAGTTCCAT 1191131 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGAC 125876 |||||||||| ||| || | | | ||| | | ||| | | || | | Sbjct 1191132 CCAATCAAATGGATTCGTT-ACACCGTACACCTTGCCGCACCCGAGCGCACCCAGCAACC 1191190 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||||| ||| |||| ||||| | | |||| ||| |||||| || | | | Sbjct 1191191 GATCCGCCACGAACTCGATGTATTGACCCATCAGGTCACGGTTCATGCCCACCAACGCGC 1191250 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 |||| |||||||| ||| |||| || |||| || || || || || |||||||| | | Sbjct 1191251 ATGGAAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACTGCGTCACGCACGATTGACT 1191310 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGC---GCAAAGTCTTGAAGAGTTCCACGGCAAACT 126053 | | ||| || | | || | | | | | | || ||| |||| ||| | Sbjct 1191311 TCACGCGCTCCTCCGTGAGCTTGTTCCTGAGGAGACTGTAGAGGAGG--CACGCGAAA-T 1191367 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | |||||| || ||||| || ||||| | || |||||||| | ||| ||||| | Sbjct 1191368 CGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAATCCCGGCATTA 1191427 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 || ||||| |||| ||| || ||||| || || || ||||||||||| || || | Sbjct 1191428 ACCCGCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAGATCCCTTCAA 1191487 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCA 126233 | || ||||| || | ||| | ||| || ||| | ||| ||| | ||| |||| Sbjct 1191488 CGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGAC---CCGTCGATCCATTTCA 1191544 Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 126293 |||||||||| ||||| || ||| || || | ||||| ||| || ||| || | | Sbjct 1191545 TCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCGAAAAAGGTGGT 1191604 Query 126294 -TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCG--T 126350 ||| | || | || || ||||| | || | ||| || | | || ||| | Sbjct 1191605 CTCTCTCCT-TCGCGTCCTTTATGTAGGTGTCGAGGAG--GAGACTGTACATCTCCGAAT 1191661 Query 126351 GGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCT 126410 ||| | || | | ||| | ||||||| | ||||| || | ||| | Sbjct 1191662 GGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGACCTGAA--- 1191718 Query 126411 CATCGG-CA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAA 126467 |||||| || || | | || ||||| || ||||| || ||||| | ||||| | Sbjct 1191719 CATCGGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCGGCAAAGA 1191778 Query 126468 ACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTT---CCAGTCGT 126524 | || |||| || | ||||| | | |||| |||||||||||||| ||| || Sbjct 1191779 AAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGTTCAGGGTCTTCTCCCAATCTC 1191838 Query 126525 CAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAA 126562 | ||||| ||| ||||| |||||||| || |||||| Sbjct 1191839 GGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAA 1191876 >seq6273 Length=1470056 Score = 125 bits (138), Expect = 9e-24 Identities = 205/291 (70%), Gaps = 12/291 (4%) Strand=Plus/Minus Query 8649 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCA 8708 |||||||||||| |||| ||||| || || ||| ||||||||| ||||||||||||||| Sbjct 522083 AATTACCGAGAAGCCTACGGTCTATTCGCCTGCAACGGTATTCTGTTCAACCACGAGTCA 522024 Query 8709 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-----CGATGGTATCAAACAAA 8763 || ||||| ||| | | |||||||| ||| || || || ||| | | ||| Sbjct 522023 CCGCGTCGGGGCGAGAACTTCGTGACTCGGAAAATAACTCGGGCGGTGGGACGGATCAA- 521965 Query 8764 TCGTCGCGGGTG-AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 8822 | | | || || || || | ||| |||| |||||| | || |||||||||| Sbjct 521964 --GGTGGGATTGCAGCGGAAGCT-ATT--CCTGGGAAACCTCCAGGCATCGAGGGACTGG 521910 Query 8823 GGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGAC 8882 ||| ||| |||||| || || || |||||||| | || || || || |||||||| Sbjct 521909 GGATTCGCGGGGGACTACGTGGAGGCAATGTGGCTGATGCTGCAGCAGGAGAAGGCGGAC 521850 Query 8883 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 8933 || || || || ||||| | |||| | ||| | || ||| ||| | ||| Sbjct 521849 GATTACGTGGTGGCGACAGAGGAGTCGCACACAGTGGAGGAATTCCTGGAG 521799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597262137696920