Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq6636 93.3 3e-14
seq5186 91.5 1e-13
>seq6636
Length=1297912
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| || || || || || || || || |||||||| ||| ||| | | |||| ||
Sbjct 787834 AACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGACCGTCCTC 787893
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| ||| || || ||| | ||||| ||||| ||||| || ||||||||||||||
Sbjct 787894 CAGTTGCTTCCCGGCGAAGATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTG 787953
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||| ||| || ||| | || || || ||| || || |||| ||| || || ||
Sbjct 787954 AATCTTGGCCTTCACATTGTCGATCGTGTCGGAGGACTCGACCTCTAGGGTTATAGTCTT 788013
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180
|| || || ||||| |||||||| ||||| |||
Sbjct 788014 CCCCGTAAGGGTTTTCACAAAAATCTGCATCTTT 788047
>seq5186
Length=9353477
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| ||||| || ||||| || |||||||| || ||| ||| | || ||||||||
Sbjct 4546883 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGCGAGTGTTCGTCCATCCTCTAATTGC 4546824
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || ||| ||||||| | ||| || || ||||||||||||||||| || |||
Sbjct 4546823 TTCCCCGCGAATATCAACCTCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTG 4546764
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| ||| | || || || || | || || || | || ||||| || || ||
Sbjct 4546763 GATTTGACATTCTCGATTGTGTCCGAGCTCTCAACCTCGAGCGTGATGGTCTTTCCAGTA 4546704
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
||||| || || || ||||||||
Sbjct 4546703 AGAGTCTTCACGAAGATTTGCAT 4546681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357338646846965
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |