Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq6636 93.3 3e-14 seq5186 91.5 1e-13 >seq6636 Length=1297912 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || || || || || || || |||||||| ||| ||| | | |||| || Sbjct 787834 AACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGACCGTCCTC 787893 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | ||||| ||||| ||||| || |||||||||||||| Sbjct 787894 CAGTTGCTTCCCGGCGAAGATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTG 787953 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| || ||| | || || || ||| || || |||| ||| || || || Sbjct 787954 AATCTTGGCCTTCACATTGTCGATCGTGTCGGAGGACTCGACCTCTAGGGTTATAGTCTT 788013 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || || ||||| |||||||| ||||| ||| Sbjct 788014 CCCCGTAAGGGTTTTCACAAAAATCTGCATCTTT 788047 >seq5186 Length=9353477 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || ||||| || |||||||| || ||| ||| | || |||||||| Sbjct 4546883 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGCGAGTGTTCGTCCATCCTCTAATTGC 4546824 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| ||||||| | ||| || || ||||||||||||||||| || ||| Sbjct 4546823 TTCCCCGCGAATATCAACCTCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTG 4546764 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || || | || || || | || ||||| || || || Sbjct 4546763 GATTTGACATTCTCGATTGTGTCCGAGCTCTCAACCTCGAGCGTGATGGTCTTTCCAGTA 4546704 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || |||||||| Sbjct 4546703 AGAGTCTTCACGAAGATTTGCAT 4546681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357338646846965