Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5186 132 4e-26 seq6695 116 3e-21 seq6636 111 1e-19 seq7521 107 2e-18 seq10304 105 6e-18 seq1 86.0 6e-12 >seq5186 Length=9353477 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| ||||| | || ||| ||||||||||| || ||||| |||||||| ||||| Sbjct 4547138 ATTCCTCCACGGAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCA 4547079 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| |||| |||||||| ||| | |||| | ||||| ||||| Sbjct 4547078 GCCAGTGTCCTCCCATCTTCCAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGG 4547019 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || || || || ||||| || | |||||||| ||| Sbjct 4547018 GGAATCCCTTCCTTGTCCTGGATCTTGGTTTTGACATTCTCGATCGTGTCGGAGCTCTCC 4546959 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| | ||| |||||||| || ||||| || || ||||||||| Sbjct 4546958 ACCTCCAGAGTGATCGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATC 4546908 >seq6695 Length=6602074 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || |||||||||||||| || || ||| | ||| ||| || Sbjct 809981 ACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCA 809922 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | || | | |||||||||||| ||||| ||||| || || || Sbjct 809921 AGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGG 809862 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||||| || | |||||| ||| ||| ||||||||||| | || ||| Sbjct 809861 ATCTTTGCTTTGACATTGTCAATGGTGTCCGAACTCTCAACTTCGAGAGTGATGGTCTTG 809802 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||||| || ||||| ||||| ||||||||| ||||| Sbjct 809801 CCGGTGAGGGTTTTCACAAATATTTGCATCTGGCGAC 809765 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || |||||||||||||| || || ||| | ||| ||| || Sbjct 804849 ACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCA 804790 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | || | | |||||||||||| || || ||||| || || || Sbjct 804789 AGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGG 804730 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||||| || | |||||| ||| ||| ||||||||||| | || ||| Sbjct 804729 ATCTTTGCTTTGACATTGTCAATGGTGTCCGAACTCTCAACTTCGAGAGTGATGGTCTTG 804670 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||||| || ||||| ||||| ||||||||| ||||| Sbjct 804669 CCGGTGAGGGTTTTCACAAATATTTGCATCTGGCGAC 804633 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||||||||||||||| || || || | ||| | ||| || Sbjct 805077 ACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCTTCG 805018 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | || | || || ||||| || || || |||||||| |||||| Sbjct 805017 AGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTGTCTTGA 804958 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| || | || | ||||||||| || || ||||| || | |||||| Sbjct 804957 ATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATCGTTTTA 804898 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| ||||| || || ||||| Sbjct 804897 CCGGTAAGAGTCTTTACGAAGATCTGCAT 804869 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||||||||||||||| || || || | ||| | ||| || Sbjct 810209 ACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCTTCG 810150 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | || | || || ||||| || || || |||||||| |||||| Sbjct 810149 AGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTGTCTTGA 810090 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| || | || | ||||||||| || || ||||| || | |||||| Sbjct 810089 ATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATCGTTTTA 810030 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| ||||| || || ||||| Sbjct 810029 CCGGTAAGAGTCTTTACGAAGATCTGCAT 810001 >seq6636 Length=1297912 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| |||||||| ||||| || || ||| || || | || |||| ||| Sbjct 787841 TGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGACCGTCCTCCAGTTGC 787900 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||||||| |||||||||||||| || ||||| || || ||||| || Sbjct 787901 TTCCCGGCGAAGATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGAATCTTG 787960 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | |||||||| |||||||| || || || | || || || || Sbjct 787961 GCCTTCACATTGTCGATCGTGTCGGAGGACTCGACCTCTAGGGTTATAGTCTTCCCCGTA 788020 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || ||||| |||||||| |||||| Sbjct 788021 AGGGTTTTCACAAAAATCTGCATC 788044 >seq7521 Length=6323785 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT-C 45169 || || || ||||| | | ||| ||||| || ||||||||||| |||||||| |||| | Sbjct 4430249 ATCCCACCACGGAGACGGAGCACGAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCC 4430308 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | |||| | || |||| || || ||||| | || | || ||||||||||| Sbjct 4430309 GCT-AGGGTTCTTCCGTCCTCCAGCTGCTTCCCTGCAAAGATGAGTCTCTGCTGGTCCGG 4430367 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 ||||| || || || |||||||| ||| ||| | || | ||||| || ||| Sbjct 4430368 GGGAATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCGATTGTGTCCGAGCTCTC 4430427 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || ||||| || || || || ||||| || ||||| Sbjct 4430428 TACCTCCAGAGTGATGGTCTTGCCCGTGAGTGTCTTCACAAAGATCTGCAT 4430478 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||| ||||||||||| || || ||| | ||| ||| || Sbjct 4430954 ACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCTTCG 4431013 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||||| || | || | | |||||||||||| ||||| ||||| || || || Sbjct 4431014 AGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGG 4431073 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 |||||| || | || | |||||| || ||||||||| || || | || || Sbjct 4431074 ATTTTTGCCTTAACATTGTCAATGGTGTCCGAGCTCTCGACTTCAAGGGTGATGGTCTTT 4431133 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || ||||| ||||| ||||||||| Sbjct 4431134 CCGGTGAGTGTTTTCACAAAGATTTGCATC 4431163 >seq10304 Length=4769457 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || ||||| || ||||| ||||| || || || | Sbjct 685619 CCACCACGGAGGCGGAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCTGCG 685560 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || ||||| ||||| || ||| | |||| || |||||||||||||| Sbjct 685559 AGGGTGCGGCCGTCCTCCAACTGTTTCCCGGCGAAAATCAGCCGCTGCTGGTCCGGCGGG 685500 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || || || || |||| || | ||||||||| ||||||||| Sbjct 685499 ATCCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACT 685440 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || ||||| ||||| || || || |||||| Sbjct 685439 TCAAGGGTTATGGTCTTCCCCGTTAGTGTTTTCACGAAGATCTGCATC 685392 >seq1 Length=11827220 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || || ||||| ||||| || || ||| Sbjct 5218873 ATACCACCACGGAGACGGAGGACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 5218932 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| ||||| || || || || | ||||| | ||||||||||| Sbjct 5218933 GCCAGAGTACGGCCATCCTCCAACTGCTTACCGGCAAAGATCAACCTCTGCTGGTCCGGT 5218992 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || || || ||| | || | || | |||||| || ||| Sbjct 5218993 GGGATGCCTTCCTTGTCCTGGATCTTGGCTTTCA-CGTTGTCGATGGTGTCAGAGCTCTC 5219051 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | ||| | ||| ||||| || || || || || || |||||||| Sbjct 5219052 GACCTCCAAAGTGATCGTCTTGCCCGTAAGGGTCTTGACGAAGATTTGCAT 5219102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451933992660040