Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6695 143 3e-29 seq1104 134 2e-26 seq7521 96.9 4e-15 >seq6695 Length=6602074 Score = 143 bits (158), Expect = 3e-29 Identities = 342/512 (67%), Gaps = 14/512 (3%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| || ||||| || ||||| | ||| |||||||| | || ||||| | || Sbjct 4468734 GTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGGCATCAACCC 4468675 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||| || | ||| |||||||| || || ||| |||||||||||||| || || || Sbjct 4468674 CCGCTTTTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAGATCCCTTCGACGCA 4468615 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| || | || | |||||| ||| | ||| || | ||| ||||| || Sbjct 4468614 GGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGAC---CCGTCGATCCATTTCATTGC 4468558 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 |||||| ||||| ||| ||| || |||||||||| ||| || |||||| | | | Sbjct 4468557 CCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACGAAAGAGGTGGTCTCT 4468498 Query 127771 TTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC--GTGGACC 127828 ||| | ||| |||||||| |||| | ||| | || | | || || ||||| Sbjct 4468497 CTCTTTCGCATCCTTGATGTAGGTATCGAGGAG--TAGACTGTACATCTCCGAGTGGATA 4468440 Query 127829 ATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 127888 | || | | |||| | ||||||| | |||||| || | ||| || || || Sbjct 4468439 TTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGACCTGGACATC--CG 4468382 Query 127889 GCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 127946 || || | || ||||| || || || || || || | || || ||||| | Sbjct 4468381 ACATGAACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCCGCGAAGAACGCGA 4468322 Query 127947 GGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGG---TCTTCCAGTCGTCGAGAT 128003 | | | | ||||| | ||||| |||||||||| ||| ||| ||| | || Sbjct 4468321 GCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCATCTCCCAATCGCGAACAT 4468262 Query 128004 CCTTTGAGAGATCTACCTCCTCCGCAGTCCAA 128035 ||| || ||||| |||||||| ||||||||| Sbjct 4468261 CCTGCGACAGATCGACCTCCTCGGCAGTCCAA 4468230 >seq1104 Length=4098138 Score = 134 bits (148), Expect = 2e-26 Identities = 564/876 (64%), Gaps = 26/876 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || |||| ||||||||| ||||| |||||||| | || ||| ||||| Sbjct 1191072 GTACTCTCCAACCCTCTTCTCGAAAAAGTTGGTCTTCCCCTGCAGCGAGATCAGTTCCAT 1191131 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGAC 127349 |||||||||| ||| || | | | ||| | | ||| | | || | | Sbjct 1191132 CCAATCAAATGGATTCGTT-ACACCGTACACCTTGCCGCACCCGAGCGCACCCAGCAACC 1191190 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||||| ||| |||| ||||| | | |||| ||| |||||| || | | | Sbjct 1191191 GATCCGCCACGAACTCGATGTATTGACCCATCAGGTCACGGTTCATGCCCACCAACGCGC 1191250 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 |||| |||||||| ||| |||| || |||| ||||| || || || || ||||| | | Sbjct 1191251 ATGGAAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACTGCGTCACGCACGATTGACT 1191310 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGC---GTAAAGTCTTGAAGAGTTCCACAGCAAACT 127526 | ||| || | | || | | | | | | || ||| ||| || || | Sbjct 1191311 TCACGCGCTCCTCCGTGAGCTTGTTCCTGAGGAGACTGTAGAGGAGG--CAC-GCGAAAT 1191367 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | |||||| || ||||| || ||||| | || |||||||| | || ||||| | Sbjct 1191368 CGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAATCCCGGCATTA 1191427 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 || ||||| |||| ||| || ||||| || || ||| |||||||||||||| || | Sbjct 1191428 ACCCGCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAGATCCCTTCAA 1191487 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCA 127706 | || ||||| || | || | |||||| ||| | ||| || | ||| |||| Sbjct 1191488 CGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGAC---CCGTCGATCCATTTCA 1191544 Query 127707 TCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 127766 |||||||||||||||| || ||| || || | ||||| ||| || ||| || | | Sbjct 1191545 TCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCGAAAAAGGTGGT 1191604 Query 127767 -TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCG--T 127823 ||| | || | || || ||||| | || | ||| || | | || ||| | Sbjct 1191605 CTCTCTCCT-TCGCGTCCTTTATGTAGGTGTCGAGGAG--GAGACTGTACATCTCCGAAT 1191661 Query 127824 GGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCT 127883 ||| | || | | ||| | ||||||| | ||||| || | ||| | Sbjct 1191662 GGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGACCTGAA--- 1191718 Query 127884 CATCGG-CA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAA 127940 |||||| || || | | || ||||| || ||||| || ||||| | ||||| | Sbjct 1191719 CATCGGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCGGCAAAGA 1191778 Query 127941 ACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTT---CCAGTCGT 127997 | || |||| || | ||||| | | |||| |||||||||||||| ||| || Sbjct 1191779 AAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGTTCAGGGTCTTCTCCCAATCTC 1191838 Query 127998 CGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTAT 128057 || ||||| || ||||| |||||||| || |||||| | ||||||||| | Sbjct 1191839 GGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGCCTTCTTGT 1191898 Query 128058 AGAGTTCCCAGAGGTGGGGATACTTCAGGGGGAACA 128093 | | ||||||| || ||| | | | ||||||| Sbjct 1191899 ACATCTCCCAGATCTGAGGAAATTGAATCGGGAACA 1191934 >seq7521 Length=6323785 Score = 96.9 bits (106), Expect = 4e-15 Identities = 194/282 (69%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CG 12846 ||||| || |||||||| |||| ||| || || | ||| ||||| | ||| ||||| | Sbjct 1637381 TCGAAACCGTCCATCTCGGTCAGGAGCTGGTTAAGGGTCTGTTCTCTTTCGTCATTACCT 1637440 Query 12847 CGGGC-ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACG 12905 | | |||||| | || |||| ||||||| ||||| ||||| || | || ||| Sbjct 1637441 CCACCGATACCAGTTCCTCT---TTGCCTACCGACAGCGTCTATTTCATCCACAAAGACG 1637497 Query 12906 ATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 12965 || || || |||||| ||| | |||| ||| || || ||| |||||| ||| Sbjct 1637498 ATGCATGGAGCATTTTCCTTGGCTTTCTTGAAGAGATCACGGACCCTCGAGGCACCAACA 1637557 Query 12966 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTC 13024 || ||||||||||||||||| | || | | | || | || || ||||| | ||| Sbjct 1637558 CCGACAAACATCTCCACAAACTCGGAACCCG-AGATGGAGAAAAAAGGGACACCAGCTTC 1637616 Query 13025 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 ||| || || ||| || || || ||||| || || || || Sbjct 1637617 ACCGGCAATTGCTTTTGCCAGAAGCGTCTTTCCGGTACCAGG 1637658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613413264378840