Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1104 183 5e-41 seq6695 156 7e-33 >seq1104 Length=4098138 Score = 183 bits (202), Expect = 5e-41 Identities = 544/834 (65%), Gaps = 10/834 (1%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||||||||||||||| |||| || || || |||||| | | ||||| | Sbjct 1191086 TCTTCTCGAAAAAGTTGGTCTTCCCCTGCAGCGAGATCAGTTCCATCCAATCAAATGGAT 1191145 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || | || || ||| | ||||| || ||||||||| || ||||| || | Sbjct 1191146 TCGTTACACCGTACACCTTGCCGCACCCGAGCGCACCCAGCAACCGATCCGCCACGAACT 1191205 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 ||||||| || |||| | |||| ||| || |||| || | || ||||| || Sbjct 1191206 CGATGTATTGACCCATCAGGTCACGGTTCATGCCCACCAACGCGCATGGAAGCGCGTCGC 1191265 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 | | |||||| |||| || ||||| || || ||| || | || || || | | Sbjct 1191266 AGACGAACTCCCTCTCGATGTCGACTGCGTCACGCACGATTGACTTCACGCGCTCCTCCG 1191325 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 ||||| | || || | | ||||||||||| || |||||||| || || | Sbjct 1191326 TGAGCTTGTTCC---TGAGGAGACTGTAGAGGAGGCACGCGAAATCGCAGTGGAGGCCTT 1191382 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||| |||||||| || | | | |||||||| | ||| ||| ||| | Sbjct 1191383 CGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAATCCCGGCATTAACCCGCGCTTTTTCA 1191442 Query 160008 GCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 ||||||| || | |||| |||| ||| || |||||||| || ||| || || || Sbjct 1191443 GCCAAAATATCG-CGCAGAAGCTGCCGGAGAAGAAGATCCCTTCAACGCAGGCGAAGGCG 1191501 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTG-GTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 | ||| ||||| | || || || | | | | |||| | | ||||| | || Sbjct 1191502 ATGAGTCTCTCGGC----GAAGCTCTGAGACCCGTCGATCCATTTCATCGCCCACTGTGC 1191557 Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185 |||||| |||| ||| || ||| ||||| |||| ||| | ||| ||||||| | Sbjct 1191558 CTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCGAAAAAGGTGGTCTCTCTCCTTCGC 1191617 Query 160186 ATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGC 160245 ||||| || || | | || |||||| || | || | || ||||| || Sbjct 1191618 GTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACATCTCCGAATGGATGTTCTCGATCGC 1191677 Query 160246 CATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTG 160305 ||||| ||| |||||| ||||||| ||| || || |||||| Sbjct 1191678 GATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGACCTGAACATCGGACATGAACCGGGA 1191737 Query 160306 ACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGAT 160365 | | || || | || | ||||||| ||| ||||||||||| | || || | ||| Sbjct 1191738 AGCGAGGTTCTCCAACACAATACCGTCGGAGGCGGCAAAGAAAGCGAGGACATGGGTGAT 1191797 Query 160366 GAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATC 160425 ||| || | ||| | | ||| || |||| ||||| | | || || || | || ||| Sbjct 1191798 GAAGTGCCGTTCGCCGTCGTTCAGGGTCTTCTCCCAATCTCGGACATCCTGCGACAGATC 1191857 Query 160426 AACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 ||||| || ||| ||||| | |||| ||| | |||||||| ||||||| Sbjct 1191858 GACCTCCTCGGCGGTCCAAAACGAGGCCTCAGCCTTCTTGTACATCTCCCAGAT 1191911 >seq6695 Length=6602074 Score = 156 bits (172), Expect = 7e-33 Identities = 542/836 (65%), Gaps = 16/836 (2%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| |||| | ||||| ||||| | | ||||| || Sbjct 4469019 CTTCTCGAAGAAGTTGGTCTTCCCCTGTAGCGATATCAGCTCCATCCAATCAAATGGATT 4468960 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| || ||| | || || || |||||| || || |||||||| || Sbjct 4468959 TGGCACACCGTACACCTTACCGTACCCAAGCGCACCCAGCAGCCGATCCGCCACAAACTC 4468900 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | |||| |||| ||| ||||||| || | || || || || | Sbjct 4468899 GATGTATTGGCTCATCAAGTCACGGTTCATCCCCACCAACGCGCATGGCAGAGCGTCGCA 4468840 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 | ||||| |||| || ||||| || ||| || || | ||| || || | Sbjct 4468839 TACGAACTCTCTCTCGATGTCGACGGCGTCGCGGACGATTGACTTGACGCGCTCCTCGGT 4468780 Query 159889 CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948 | ||||| | || || | | ||||| ||||| || |||||||| || || || Sbjct 4468779 CAGCTTGGTCC---TGAGGAGACTGTATAGGAGACACGCGAAATCGCAGTGGAGGCCTTC 4468723 Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008 ||| || ||||| || ||||| || | | | |||||||| | ||| ||| ||| || Sbjct 4468722 GTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGGCATCAACCCCCGCTTTTTTAG 4468663 Query 160009 CCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067 ||||||||| | |||| ||| ||| || |||||||| || ||| || || || | Sbjct 4468662 CCAAAAAATCG-CGCAGAAACTGCCGGAGAAGAAGATCCCTTCGACGCAGGCGAAGGCGA 4468604 Query 160068 CGAGCCTCTCACCAAAAGAGGCGTTG-GTGTCATGGGTCCACCTTTTGGCCCATTCAGCC 160126 ||| ||||| | || || ||| | | | | |||| | | ||||| | ||| Sbjct 4468603 TGAGTCTCTCGGC----GAAGCTTTGAGACCCGTCGATCCATTTCATTGCCCACTGCGCC 4468548 Query 160127 TTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACA 160186 ||||| |||| ||| || | | ||||| ||| ||| | ||| ||| ||| || Sbjct 4468547 TTCTTCGCGACGCAAGGGACGGTCTCGATGGCACGAAAGAGGTGGTCTCTCTCTTTCGCA 4468488 Query 160187 TCCTTGATCAGAGTAGCAATCAGCTTCGA--GTACATTTCTGCGTGCACATTTTCGATGG 160244 |||||||| ||| | | || | || |||||| || | ||| | ||| ||||| | Sbjct 4468487 TCCTTGATGTAGGTATCGAGGAG--TAGACTGTACATCTCCGAGTGGATATTCTCGATCG 4468430 Query 160245 CCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AGATACTGCACCTCCTGTGTGAACCTT 160303 | ||||||||| |||||| ||||||| ||| ||| || ||| |||||| Sbjct 4468429 CGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGA-CCTGGACATCCGACATGAACCGA 4468371 Query 160304 TGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAG 160363 | | || || | || | ||||| | |||||| ||||| || | |||||| | | Sbjct 4468370 GAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCCGCGAAGAACGCGAGCACGTGGGTG 4468311 Query 160364 ATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAA 160423 ||||| || | || | | ||| || || | ||||| | || || || | || | Sbjct 4468310 ATGAAGTGGCGTTCACCATCGTTCAGGGTCATCTCCCAATCGCGAACATCCTGCGACAGA 4468251 Query 160424 TCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || ||||| || || ||||| | ||||| || | |||||||| ||||||| Sbjct 4468250 TCGACCTCCTCGGCAGTCCAAAATGAAGCCTCGGCCTTCTTGTACATCTCCCAGAT 4468195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795033451799440