Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq5186 86.0 4e-12 >seq5186 Length=9353477 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||| |||| ||||| || || || || ||||| ||||| ||| Sbjct 4547135 CCTCCACGGAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCAGCC 4547076 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| |||| ||||| ||| | || || | | ||||||||||| ||| Sbjct 4547075 AGTGTCCTCCCATCTTCCAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGGGGA 4547016 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| || || ||| | || | | ||||| | ||| ||||| Sbjct 4547015 ATCCCTTCCTTGTCCTGGATCTTGGTTTTGACATTCTCGATCGTGTCGGAGCTCTCCACC 4546956 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||| || || || || || | ||||| |||||||| ||||| Sbjct 4546955 TCCAGAGTGATCGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4546909 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || |||| ||| || ||||| || | || ||||| || || || || | Sbjct 7866024 CATC-CCACCACGCAGACGGAGAACCAAGTGGAGGGTAGACTCTTTCTGGATGTTGTAGT 7866082 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||||| |||| |||| |||| || |||||| | ||||| | | ||||| |||| Sbjct 7866083 CGGCCAGGGTGCGTCCATCCTCCAGCTGCTTCCCGGCGAAAATCAGCCTTTGCTGGTCCG 7866142 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 ||| | || || ||||| || || || | ||| | | | ||||| | ||| Sbjct 7866143 GGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTTA-CGTTGTCGATGGTGTCGGAGCTC 7866201 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || | ||||| || ||||| || | || || ||||||||||||||| Sbjct 7866202 TCCACCTCGAGGGTAATAGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCATG 7866255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347317743037817