Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq11203 113 2e-19 seq3309 109 2e-18 seq4833 107 8e-18 seq2 104 9e-17 seq7521 98.7 4e-15 seq6695 93.3 2e-13 seq5186 87.8 7e-12 >seq11203 Length=4714577 Score = 113 bits (124), Expect = 2e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || |||||||| ||||| || ||| ||| |||| | | || | || Sbjct 3318498 GTTCTCACCAAAATGAAGGAAACTGCTGAAGCATACCTTGGGAAAACTATCACCAAAGCT 3318557 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||||||||| ||||||||||| ||||| ||| | ||||| || || ||||| || Sbjct 3318558 GTTATTACTGTTCCAGCTTATTTCAACGATGCTCAAAGACAAGCCACAAAGGATGCTGGG 3318617 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 || |||||| | |||| | | || || |||||||| ||||| ||||||||| || Sbjct 3318618 AGAATCGCTGGTCTTGATGTGCAGAGGATCATCAATGAACCGACAGCTGCTGCTCTATCA 3318677 Query 451445 TATGG 451449 ||||| Sbjct 3318678 TATGG 3318682 >seq3309 Length=3363706 Score = 109 bits (120), Expect = 2e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || |||||||| ||||| || ||| ||| |||| | | || | || Sbjct 2506539 GTTCTCACGAAAATGAAGGAAACTGCCGAAGCATACCTTGGGAAAACTATCACCAAAGCT 2506480 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||||||||| |||||||||||||||||||| | ||||| ||||| ||||| || Sbjct 2506479 GTTATTACTGTTCCTGCTTATTTCAATGATGCACAGAGACAAGCCACTAAGGATGCTGGG 2506420 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 || |||||| | |||| | | || || || ||||| ||||| ||||| || || Sbjct 2506419 AGAATCGCTGGTCTTGATGTCCAGAGGATCATCAACGAACCAACAGCTGCTGCCCTGTCA 2506360 Query 451445 TATGG 451449 ||||| Sbjct 2506359 TATGG 2506355 >seq4833 Length=3074427 Score = 107 bits (118), Expect = 8e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || ||||||||||| ||||||| || ||||| ||||||||| | ||||| |||| Sbjct 744193 ATAGGGATTGATCTTGGTACCACCTACTCTTGTGTTGGTGTTTACAAGAATGGTCATGTG 744134 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 ||||||||||| ||||||||||| || | |||||| |||||||| ||| || || Sbjct 744133 GAAATTATAGCCAATGACCAAGGTAACCGTATTACTCCCTCATGGGTGGCTTTCACCGAC 744074 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA 451065 || || || || | || | ||||| || Sbjct 744073 TCCGAGAGGCTGATTGGTGAGGCTGCGAA 744045 >seq2 Length=4120898 Score = 104 bits (114), Expect = 9e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 |||||||| || |||||||| || ||||| || | || | ||| | | || Sbjct 1312357 GTTCTTACAAAGATGAAAGAGACTGCAGAGGCTTACCTCGGGAAATCTGTTTCCAAGGCT 1312298 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || || ||||| || || |||||||||||||| ||| | || ||||| ||||||||||| Sbjct 1312297 GTTATCACTGTGCCAGCATATTTCAATGATGCTCAAAGACAGGCAACAAAAGATGCAGGT 1312238 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 ||||||||| | |||| ||||||| || ||||| ||||||||||| || | Sbjct 1312237 AGAATTGCTGGTCTTGATGTGGAGAGAATTATAAACGAACCCACAGCAGCTGCGCTTTCT 1312178 Query 451445 TATGG 451449 ||||| Sbjct 1312177 TATGG 1312173 >seq7521 Length=6323785 Score = 98.7 bits (108), Expect = 4e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || |||||||| || || || || || || ||||| || || || Sbjct 4431162 ATGCAAATCTTTGTGAAAACACTCACCGGAAAGACCATCACCCTTGAAGTCGAGAGCTCG 4431103 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | |||| |||||| || || ||||||||||||||||| || || Sbjct 4431102 GACACCATTGACAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATTCCTCCGGACCAG 4431043 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || ||||| || |||||||| | || ||||| || || || Sbjct 4431042 CAAAGGCTTATCTTTGCCGGAAAACAGCTCGAAGATGGCCGCACCTTGGCCGACTACAAC 4430983 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| |||| || ||| Sbjct 4430982 ATCCAAAAGGAGTCAACCCTCCAC 4430959 >seq6695 Length=6602074 Score = 93.3 bits (102), Expect = 2e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || |||||||| || || || || |||||| || Sbjct 804869 ATGCAGATCTTCGTAAAGACTCTTACCGGTAAAACGATCACCCTCGAGGTTGAAAGCTCC 804928 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || ||| |||||||| || |||||||| ||||| || ||| Sbjct 804929 GACACCATTGACAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAA 804988 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || || || ||||||||||| || | || || || || Sbjct 804989 CAGAGACTCATCTTTGCTGGTAAGCAGCTCGAAGATGGAAGGACCCTTGCTGACTACAAC 805048 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| |||| || ||| Sbjct 805049 ATCCAAAAGGAATCAACTCTCCAC 805072 Score = 93.3 bits (102), Expect = 2e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || |||||||| || || || || |||||| || Sbjct 810001 ATGCAGATCTTCGTAAAGACTCTTACCGGTAAAACGATCACCCTCGAGGTTGAAAGCTCC 810060 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || ||| |||||||| || |||||||| ||||| || ||| Sbjct 810061 GACACCATTGACAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAA 810120 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || || || ||||||||||| || | || || || || Sbjct 810121 CAGAGACTCATCTTTGCTGGTAAGCAGCTCGAAGATGGAAGGACCCTTGCTGACTACAAC 810180 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| |||| || ||| Sbjct 810181 ATCCAAAAGGAATCAACTCTCCAC 810204 Score = 89.7 bits (98), Expect = 2e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 ||||||| || ||||| || || || || || || ||||| || ||||| || || Sbjct 809778 AATATTT--GTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCGGAC 809835 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | |||||| | | ||| ||| || || || ||||||||||||||||| || || ||| Sbjct 809836 ACCATTGACAATGTCAAAGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAGCAA 809895 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 | | || || | || ||||| ||||| ||||| | || ||||| || || || || Sbjct 809896 AGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAACATC 809955 Query 391233 GATAAGGATGCAACACTTCAC 391253 | ||||| | || || ||| Sbjct 809956 CAAAAGGAATCGACTCTCCAC 809976 Score = 89.7 bits (98), Expect = 2e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || ||||| || || || || |||||| ||| Sbjct 810457 ATGCAGATCTTCGTCAAGACCCTTACCGGCAAAACAATCACCCTCGAGGTTGAAAGCTCT 810516 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || ||| || || |||||||||||||| ||||| || ||| Sbjct 810517 GACACAATTGATAATGTCAAGGCAAAGATCCAGGATAAGGAAGGAATCCCTCCGGACCAA 810576 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || ||||| || || |||||| |||| | || || || ||| Sbjct 810577 CAGAGACTCATCTTTGCTGGCAAACAGCTGGAGGATGGACGAACCCTTGCTGACTACAAT 810636 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 810637 ATCCAGAAGGAATCCACCCTCCAC 810660 Score = 86.0 bits (94), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 ||||||| || ||||| || || || || || || ||||| || ||||| || || Sbjct 804646 AATATTT--GTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCGGAC 804703 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | |||||| | | ||| ||| || || || ||||||||||| ||||| || || ||| Sbjct 804704 ACCATTGACAATGTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAGCAA 804763 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 | | || || | || ||||| ||||| ||||| | || ||||| || || || || Sbjct 804764 AGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAACATC 804823 Query 391233 GATAAGGATGCAACACTTCAC 391253 | ||||| | || || ||| Sbjct 804824 CAAAAGGAATCGACTCTCCAC 804844 Score = 84.2 bits (92), Expect = 9e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || ||||| || |||||||| ||||| || Sbjct 810685 ATGCAGATCTTTGTCAAGACCCTCACGGGGAAAACCATAACTCTTGAAGTTGAGAGCTCA 810744 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | |||| || ||||| ||||||||||| || ||||| || || Sbjct 810745 GATACCATTGACAATGTTAAGGCGAAGATTCAGGATAAGGAAGGGATCCCTCCGGACCAG 810804 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || ||||| || || |||||| |||| | || || || || Sbjct 810805 CAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGACGAACCCTTGCAGACTACAAC 810864 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | || || | || |||||| Sbjct 810865 ATCCAGAAAGAGTCCACCCTTCAC 810888 >seq5186 Length=9353477 Score = 87.8 bits (96), Expect = 7e-12 Identities = 189/276 (68%), Gaps = 10/276 (4%) Strand=Plus/Minus Query 451976 CTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCT 452035 || || |||||| |||| |||||||||||||| || ||||| ||||| || || || || Sbjct 5346958 CTCTGCAAGAGCATAAACCCTGATGAAGCTGTCGCCTATGGAGCTGCTGTCCAGGCCGCC 5346899 Query 452036 ATTCTAACAGGTTCAGATGATG--AAAAATTAGGAGATATTCTGTTAGTAGATGTAACAC 452093 ||||| ||||| | | || | |||| | |||| | || | | || || |||| Sbjct 5346898 ATTCTTACAGG--CGAAGGAAGCCAAAAGGTTCAAGATCTACTTCTTCTCGACGTCACAC 5346841 Query 452094 CTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGA- 452152 |||| || ||| | || ||||| |||||| |||||||| | | || |||||| Sbjct 5346840 CTCTGAGCCTCGGAATCGAGACAGCAGGTGGAGTGATGACTGTTCTGAT--CCCGAGGAA 5346783 Query 452153 -ACTTCTATTCCTTGTAA-AAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAG 452210 ||| | ||||| || || |||||| ||| || || || ||||| | Sbjct 5346782 CACTACCATTCCCTGCAAGAAAGAG-CAAGTGTTCTCGACGTATTCAGACAACCAGACGA 5346724 Query 452211 GTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAA 452246 |||| || ||||||| |||||||||||| |||| Sbjct 5346723 GTGTTCTGATCCAAGTGTATGAAGGAGAACGCGCAA 5346688 Score = 87.8 bits (96), Expect = 7e-12 Identities = 189/276 (68%), Gaps = 10/276 (4%) Strand=Plus/Minus Query 451976 CTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCT 452035 || || |||||| |||| |||||||||||||| || ||||| ||||| || || || || Sbjct 5352224 CTCTGCAAGAGCATAAACCCTGATGAAGCTGTCGCCTATGGAGCTGCTGTCCAGGCCGCC 5352165 Query 452036 ATTCTAACAGGTTCAGATGATG--AAAAATTAGGAGATATTCTGTTAGTAGATGTAACAC 452093 ||||| ||||| | | || | |||| | |||| | || | | || || |||| Sbjct 5352164 ATTCTTACAGG--CGAAGGAAGCCAAAAGGTTCAAGATCTACTTCTTCTCGACGTCACAC 5352107 Query 452094 CTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGA- 452152 |||| || ||| | || ||||| |||||| |||||||| | | || |||||| Sbjct 5352106 CTCTGAGCCTCGGAATCGAGACAGCAGGTGGAGTGATGACTGTTCTGAT--CCCGAGGAA 5352049 Query 452153 -ACTTCTATTCCTTGTAA-AAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAG 452210 ||| | ||||| || || |||||| ||| || || || ||||| | Sbjct 5352048 CACTACCATTCCCTGCAAGAAAGAG-CAAGTGTTCTCGACGTATTCAGACAACCAGACGA 5351990 Query 452211 GTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAA 452246 |||| || ||||||| |||||||||||| |||| Sbjct 5351989 GTGTTCTGATCCAAGTGTATGAAGGAGAACGCGCAA 5351954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975408330136892