Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7521 145 9e-30 seq6695 105 8e-18 seq1104 102 1e-16 seq9362 87.8 2e-12 seq555 87.8 2e-12 >seq7521 Length=6323785 Score = 145 bits (160), Expect = 9e-30 Identities = 280/408 (69%), Gaps = 14/408 (3%) Strand=Plus/Plus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 || ||||| |||||||| |||| |||||||||| || ||||| | ||| ||||| || Sbjct 1637381 TCGAAACCGTCCATCTCGGTCAGGAGCTGGTTAAGGGTCTGTTCTCTTTCGTCATTACCT 1637440 Query 16032 GGCATACC---ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||| ||||| | | |||| | || || || || || ||||| | |||||| Sbjct 1637441 CC---ACCGATACCAGTTCCTCTTTGCCTACCGACAGCGTCTATTTCATCCACAAAGACG 1637497 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 |||||||| |||||| || | |||||||| || || | | ||| || ||| Sbjct 1637498 ATGCATGGAGCATTTTCCTTGGCTTTCTTGAAGAGATCACGGACCCTCGAGGCACCAACA 1637557 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 || ||||||||||||||||| | | | | | || | || || |||||| || ||| Sbjct 1637558 CCGACAAACATCTCCACAAACTCGGAACCCG-AGATGGAGAAAAAAGGGACACCAGCTTC 1637616 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| ||||| ||| || ||||| ||||| || ||||| || ||| | ||||| | Sbjct 1637617 ACCGGCAATTGCTTTTGCCAGAAGCGTCTTTCCGGTACCAGGAGGACCGACAAGGAGAAC 1637676 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 |||| |||||| ||||||| || | |||||||||| | ||| ||||| || || Sbjct 1637677 ACCTTTAGGAATCCTGGCGCCGACCGCAGTGAATCTCTCAGGCTTCTTCAGAAACTCGAC 1637736 Query 16328 AATCTCTTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | ||||| || || | ||||| | |||| || ||||||| Sbjct 1637737 TA---CTTCCATGAAGTCTTGCTTGGCTTCATCAACTCCGGCAACATC 1637781 >seq6695 Length=6602074 Score = 105 bits (116), Expect = 8e-18 Identities = 197/289 (68%), Gaps = 3/289 (1%) Strand=Plus/Plus Query 102032 GGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCT 102091 ||||| |||||| |||| | || | || || ||||||| |||| | || || Sbjct 4468449 GGAGATGTACAGTCTACTCCTCGATACCTACATCAAGGATGCGAAAGAGAGAGACCACCT 4468508 Query 102092 CTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTG 102151 |||| |||||| | || || || || | ||||| ||| | ||||| ||||| || Sbjct 4468509 CTTTCGTGCCATCGAGACCGTCCCTTGCGTCGCGAAGAAGGCGCAGTGGGCAATGAAATG 4468568 Query 102152 GTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGG 102211 | | || ||| | ||| || ||| ||||| |||| || || || || || || Sbjct 4468569 GATCGACGG---GTCTCAAAGCTTCGCCGAGAGACTCATCGCCTTCGCCTGCGTCGAAGG 4468625 Query 102212 TATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCC 102271 ||||||||||| || |||||||| |||| |||||| || ||||| || | ||||| Sbjct 4468626 GATCTTCTTCTCCGGCAGTTTCTGCGCGATTTTTTGGCTAAAAAAGCGGGGGTTGATGCC 4468685 Query 102272 AGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || | ||||| ||||| | ||||| || ||||| || |||||| Sbjct 4468686 GGGATTAACTTTCTCGAACGAATTGATCTCGCGAGACGAAGGCCTCCAC 4468734 >seq1104 Length=4098138 Score = 102 bits (112), Expect = 1e-16 Identities = 376/582 (65%), Gaps = 14/582 (2%) Strand=Plus/Minus Query 101746 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 101805 ||||||| | ||||||| | | | ||| || ||||||| | || ||||||||| Sbjct 1191946 ACAGATTCTGTATGTTCCCGATTCAATTTCCTCAGATCTGGGAGATGTACAAGAAGGCTG 1191887 Query 101806 AAATGAGTAATTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGG---A 101862 | |||||| || || ||||| ||||| || ||||| | |||||| | Sbjct 1191886 AGGCCTCGTTTTGGACCGCCGAGGAGGTCGATCTGTCGCAGGATGTCCGAGATTGGGAGA 1191827 Query 101863 AGACTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGT 101922 |||| || || || ||| | | ||||| | | |||| || |||||||| | | Sbjct 1191826 AGACCCTGAACGACGGCGAACGGCACTTCATCACCCATGTCCTCGCTTTCTTTGCCGCCT 1191767 Query 101923 CCGATGGAATTGTTTTTGAGAATATCAATAACAACTT--TG-CTGATGAGGTGCAATCCT 101979 |||| || ||||| || ||||| || | | || || | |||| | || | Sbjct 1191766 CCGACGGTATTGTGTTGGAGAACCTCGCTTCCCGGTTCATGTCCGATG---TTCAGGTCG 1191710 Query 101980 CTGAAGCGAGATCTTTCTATGCGTATCAATGTCATAAT-GAAATGGTGCATGGGGAGACA 102038 | || ||| | | ||||| | | || | || || || | | ||| ||||| Sbjct 1191709 CGGAGGCGCGTGCATTCTACGGCT-TCCAGATCGCGATCGAGAACATCCATTCGGAGATG 1191651 Query 102039 TACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAA 102098 |||||| ||| | |||| || || ||||| | |||| | || || ||| Sbjct 1191650 TACAGTCTCCTCCTCGACACCTACATAAAGGACGCGAAGGAGAGAGACCACCTTTTTCGC 1191591 Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 |||||| | || |||| || | ||||| || | ||||| ||||| ||| | || Sbjct 1191590 GCCATCGAGACCATTCCTTGCGTCGCCAAGAAGGCACAGTGGGCGATGAAATGGATCGAC 1191531 Query 102159 ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTC 102218 ||| | ||| || ||| ||||| |||| || || || ||||| || |||||| Sbjct 1191530 GG---GTCTCAGAGCTTCGCCGAGAGACTCATCGCCTTCGCCTGCGTTGAAGGGATCTTC 1191474 Query 102219 TTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 102278 ||||| || ||||||||| || | |||||| || ||||| || | ||||| || | Sbjct 1191473 TTCTCCGGCAGCTTCTGCGCGATATTTTGGCTGAAAAAGCGCGGGTTAATGCCGGGATTA 1191414 Query 102279 TGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| |||||| | ||||| || ||||| || |||||| Sbjct 1191413 ACTTTCTCGAACGAGTTGATCTCGCGAGACGAAGGCCTCCAC 1191372 >seq9362 Length=5148269 Score = 87.8 bits (96), Expect = 2e-12 Identities = 304/463 (66%), Gaps = 11/463 (2%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||||| ||| || || ||||| || || || | || | ||| |||||||| | || Sbjct 1512997 GATCTGACGGTCGAATCGACCAGGCCGGAGTAAAGCTTTATCCAGGATATCGGGCCTGTT 1513056 Query 15938 CGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAG 15997 ||| | || | || |||| ||| | | || ||||||||||||| || | ||| Sbjct 1513057 GGTTCCAGCAAGTACGACAACACCAGAAGTGGTACCAAAACCATCCATTTCCACTAGAAG 1513116 Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATT---CGCTGGCATACCACCAGCACTGCGTTG 16054 ||| |||| || ||| ||||||||||| ||| | ||| ||| | || | Sbjct 1513117 CTGATTAAGGGTGCTTTCACGTTCATCATTTCCACCTGAGAAACCCCCACGGCCTCG-AG 1513175 Query 16055 CT-TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA 16113 || ||| | |||||||||||||| || || || |||| || || || ||||| Sbjct 1513176 CTCGTCCAATCGCATCAATCTCATCGATAAATACAATGCTAGGGGCATGTTGTCGAGCCT 1513235 Query 16114 CTTCAAAGAGATCCCGTACAC-GCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 16172 ||| || | | | ||| | | ||| || ||||||||||||||||||| || | | Sbjct 1513236 CTTGGAACAAGTTTCTTACCCTGGATGG-TCCAACACCAACAAACATCTCCATGAAATCT 1513294 Query 16173 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 16231 | | | | || | | ||| || ||| ||||| || || | ||| || || || Sbjct 1513295 GAACCAG-ATATCGACAGGAAAGGAACACCCGATTCCCCAGCTGTAGCTTTAGCTAGGAG 1513353 Query 16232 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGC-GCCAC 16290 ||||| || |||||||| || | | || |||||| ||||||||| || ||| Sbjct 1513354 GGTCTTCCCAGTACCTGGTGGGCCAACTAAAAGCGCACCTTTTGGAATCTTTGCTCCCAA 1513413 Query 16291 TTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 || | ||| ||| || | ||||| |||| ||||| ||| Sbjct 1513414 ATCTTCA-TATTTCTTTGGGTTTTTAAGGAAATGCACAAACTC 1513455 >seq555 Length=388411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/201 (72%), Gaps = 14/201 (7%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || || |||||||| ||||| | ||| ||||| || || || | ||||||||| || Sbjct 76839 AATCCGTCCATCTCCGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTCCCTCC- 76897 Query 16035 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 |||| ||||| | | ||| | ||||| |||||||||||||||||||| || ||| Sbjct 76898 --ACCAAGTCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATG 76955 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 ||||| ||||| || || ||||| | ||||| || || || | || || || Sbjct 76956 CATGG--CGCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACCCTAGACGCACCAAC 77011 Query 16148 ACCAACAAACATCTCCACAAA 16168 ||| || || | ||||||||| Sbjct 77012 ACCCACGAAAAGCTCCACAAA 77032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620647356579280