Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6695 91.5 2e-13 seq3309 84.2 3e-11 >seq6695 Length=6602074 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || ||||| || || ||||| | || || ||| | ||| ||||| | || Sbjct 4468733 TGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGGCATCAACCCC 4468674 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | || ||||||||||| || || || ||||| || || |||||||| || || || ||| Sbjct 4468673 CGCTTTTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAGATCCCTTCGACGCAG 4468614 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 ||||| |||| || | ||| || || | ||||| ||||| ||| || | ||||| Sbjct 4468613 GCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGACCCGTCGATCCATTTCATTGCCCAC 4468554 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 | ||||| | | | ||| ||||| || | |||||| Sbjct 4468553 TGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGC 4468516 >seq3309 Length=3363706 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/233 (68%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGG 111051 ||||| | || ||||| ||||||||||| || || | |||||| ||||| | || Sbjct 2884112 TGAGGCCTTGGTGTTCCTGCATTGAAGAGAGTGGGAGAAGCATGAGTGAACCATCGCTGA 2884171 Query 111052 GACATCTTGTTGTATGTGTCGAGTGCGGAGGGTA---CATCTTTACCGTGAATACCAATG 111108 |||||| | ||| || | || ||| || | |||| || ||| || |||| Sbjct 2884172 GACATCAAATGGTAGGTTTTGATTGCAGAATCAATGTCATCCTT---GTGGATGCCAACA 2884228 Query 111109 GCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGG 111168 ||||| | ||| ||||| | ||||||| |||| | | |||||| | || | | ||| Sbjct 2884229 GCAACCCTCATCAACATGTGTTGAGGCCTTTCAACAACCTTTCCTTGGACTTTCAGGAGG 2884288 Query 111169 TAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 || |||| || || || | |||||||| || | |||||||||||||| Sbjct 2884289 TAGGATCTCTCAAGTGTTTTAAATCCAAAGTAATCATACTCGAAATCACGATC 2884341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588885820412200