Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq6695 91.5 2e-13
seq3309 84.2 3e-11
>seq6695
Length=6602074
Score = 91.5 bits (100), Expect = 2e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
|| || ||||| || || ||||| | || || ||| | ||| ||||| | ||
Sbjct 4468733 TGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGGCATCAACCCC 4468674
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
| || ||||||||||| || || || ||||| || || |||||||| || || || |||
Sbjct 4468673 CGCTTTTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAGATCCCTTCGACGCAG 4468614
Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687
||||| |||| || | ||| || || | ||||| ||||| ||| || | |||||
Sbjct 4468613 GCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGACCCGTCGATCCATTTCATTGCCCAC 4468554
Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725
| ||||| | | | ||| ||||| || | ||||||
Sbjct 4468553 TGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGC 4468516
>seq3309
Length=3363706
Score = 84.2 bits (92), Expect = 3e-11
Identities = 159/233 (68%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGG 111051
||||| | || ||||| ||||||||||| || || | |||||| ||||| | ||
Sbjct 2884112 TGAGGCCTTGGTGTTCCTGCATTGAAGAGAGTGGGAGAAGCATGAGTGAACCATCGCTGA 2884171
Query 111052 GACATCTTGTTGTATGTGTCGAGTGCGGAGGGTA---CATCTTTACCGTGAATACCAATG 111108
|||||| | ||| || | || ||| || | |||| || ||| || ||||
Sbjct 2884172 GACATCAAATGGTAGGTTTTGATTGCAGAATCAATGTCATCCTT---GTGGATGCCAACA 2884228
Query 111109 GCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGG 111168
||||| | ||| ||||| | ||||||| |||| | | |||||| | || | | |||
Sbjct 2884229 GCAACCCTCATCAACATGTGTTGAGGCCTTTCAACAACCTTTCCTTGGACTTTCAGGAGG 2884288
Query 111169 TAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221
|| |||| || || || | |||||||| || | ||||||||||||||
Sbjct 2884289 TAGGATCTCTCAAGTGTTTTAAATCCAAAGTAATCATACTCGAAATCACGATC 2884341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588885820412200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |