Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7521 141 1e-28 seq6695 123 3e-23 seq1104 98.7 1e-15 seq555 87.8 2e-12 >seq7521 Length=6323785 Score = 141 bits (156), Expect = 1e-28 Identities = 301/444 (68%), Gaps = 14/444 (3%) Strand=Plus/Plus Query 9243 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9302 || || || || || || | ||||| || | | || ||||| |||||||| |||| Sbjct 1637345 TTTGTAGCTGCAATCACGATGATACCGGTATTACCCTCGAAACCGTCCATCTCGGTCAGG 1637404 Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGT 9359 || ||||||| || ||||| | ||| ||||| || ||| ||||| | | | Sbjct 1637405 AGCTGGTTAAGGGTCTGTTCTCTTTCGTCATTACCTCC---ACCGATACCAGTTCCTCTT 1637461 Query 9360 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 9419 ||| | || || || || || ||||| | ||||| || ||||| |||||| ||| Sbjct 1637462 TGCCTACCGACAGCGTCTATTTCATCCACAAAGACGATGCATGGAGCATTTTCCTTGGCT 1637521 Query 9420 ATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9479 | | |||||||| || ||||| ||| || ||||| ||||||||||||||||| | Sbjct 1637522 TTCTTGAAGAGATCACGGACCCTCGAGGCACCAACACCGACAAACATCTCCACAAACTCG 1637581 Query 9480 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9538 | | | | || | || || |||||| || |||||| ||||| ||| || ||||| Sbjct 1637582 GAACCCG-AGATGGAGAAAAAAGGGACACCAGCTTCACCGGCAATTGCTTTTGCCAGAAG 1637640 Query 9539 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACT 9598 ||||| || ||||| || ||| | ||||| |||| |||||| ||||||| Sbjct 1637641 CGTCTTTCCGGTACCAGGAGGACCGACAAGGAGAACACCTTTAGGAATCCTGGCGCCGAC 1637700 Query 9599 TCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCC---AATTCATCTTT 9655 || | |||||||||| | ||| ||||| || || | ||||| || || | || Sbjct 1637701 CGCAGTGAATCTCTCAGGCTTCTTCAGAAACTCGACTA---CTTCCATGAAGTCTTGCTT 1637757 Query 9656 GGCGGCGTCAATCCCCTCAACATC 9679 ||| | |||| || ||||||| Sbjct 1637758 GGCTTCATCAACTCCGGCAACATC 1637781 >seq6695 Length=6602074 Score = 123 bits (136), Expect = 3e-23 Identities = 161/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| || || ||||| || || | ||| || ||||| || || ||||| | || Sbjct 4468734 GTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGGCATCAACCC 4468675 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||| || | |||| |||| |||||||| |||||||||||||| || || || || Sbjct 4468674 CCGCTTTTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAGATCCCTTCGACGCA 4468615 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 || || || | || | |||||||||| ||||| ||| | |||||||||||| Sbjct 4468614 GGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGAC---CCGTCGATCCATTTCATTGC 4468558 Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||| | |||||||||| | | || || || || | |||||| Sbjct 4468557 CCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGC 4468516 >seq1104 Length=4098138 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| || || ||||| || || | || || ||||| || || ||||| | || Sbjct 1191372 GTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAATCCCGGCATTAACCC 1191431 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||| |||| |||| | || |||||||| |||||||||||||| || || || || Sbjct 1191432 GCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAGATCCCTTCAACGCA 1191491 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 || || || | || | |||||||||| ||||| ||| | ||||||||| || Sbjct 1191492 GGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGAC---CCGTCGATCCATTTCATCGC 1191548 Query 117465 CCATTTCGCCTTCTT 117479 ||| | |||||||| Sbjct 1191549 CCACTGTGCCTTCTT 1191563 >seq555 Length=388411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/201 (70%), Gaps = 14/201 (7%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || || |||||||| ||||| | || ||||| || || || | ||||||||| || Sbjct 76839 AATCCGTCCATCTCCGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTCCCTCC- 76897 Query 9342 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 |||| ||||| | | ||| | ||||| |||||||||||||||||||| ||||| Sbjct 76898 --ACCAAGTCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATG 76955 Query 9399 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 ||||| || |||| || | ||||| | ||| | |||||| || || || Sbjct 76956 CATGGCGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAAC 77011 Query 9455 ACCAACAAACATCTCCACAAA 9475 ||| || || | ||||||||| Sbjct 77012 ACCCACGAAAAGCTCCACAAA 77032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589890466564760