Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq7521 141 1e-28
seq6695 123 3e-23
seq1104 98.7 1e-15
seq555 87.8 2e-12
>seq7521
Length=6323785
Score = 141 bits (156), Expect = 1e-28
Identities = 301/444 (68%), Gaps = 14/444 (3%)
Strand=Plus/Plus
Query 9243 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9302
|| || || || || || | ||||| || | | || ||||| |||||||| ||||
Sbjct 1637345 TTTGTAGCTGCAATCACGATGATACCGGTATTACCCTCGAAACCGTCCATCTCGGTCAGG 1637404
Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGT 9359
|| ||||||| || ||||| | ||| ||||| || ||| ||||| | | |
Sbjct 1637405 AGCTGGTTAAGGGTCTGTTCTCTTTCGTCATTACCTCC---ACCGATACCAGTTCCTCTT 1637461
Query 9360 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 9419
||| | || || || || || ||||| | ||||| || ||||| |||||| |||
Sbjct 1637462 TGCCTACCGACAGCGTCTATTTCATCCACAAAGACGATGCATGGAGCATTTTCCTTGGCT 1637521
Query 9420 ATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9479
| | |||||||| || ||||| ||| || ||||| ||||||||||||||||| |
Sbjct 1637522 TTCTTGAAGAGATCACGGACCCTCGAGGCACCAACACCGACAAACATCTCCACAAACTCG 1637581
Query 9480 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9538
| | | | || | || || |||||| || |||||| ||||| ||| || |||||
Sbjct 1637582 GAACCCG-AGATGGAGAAAAAAGGGACACCAGCTTCACCGGCAATTGCTTTTGCCAGAAG 1637640
Query 9539 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACT 9598
||||| || ||||| || ||| | ||||| |||| |||||| |||||||
Sbjct 1637641 CGTCTTTCCGGTACCAGGAGGACCGACAAGGAGAACACCTTTAGGAATCCTGGCGCCGAC 1637700
Query 9599 TCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCC---AATTCATCTTT 9655
|| | |||||||||| | ||| ||||| || || | ||||| || || | ||
Sbjct 1637701 CGCAGTGAATCTCTCAGGCTTCTTCAGAAACTCGACTA---CTTCCATGAAGTCTTGCTT 1637757
Query 9656 GGCGGCGTCAATCCCCTCAACATC 9679
||| | |||| || |||||||
Sbjct 1637758 GGCTTCATCAACTCCGGCAACATC 1637781
>seq6695
Length=6602074
Score = 123 bits (136), Expect = 3e-23
Identities = 161/222 (73%), Gaps = 3/222 (1%)
Strand=Plus/Minus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
|||||| || || ||||| || || | ||| || ||||| || || ||||| | ||
Sbjct 4468734 GTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGGCATCAACCC 4468675
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||| || | |||| |||| |||||||| |||||||||||||| || || || ||
Sbjct 4468674 CCGCTTTTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAGATCCCTTCGACGCA 4468615
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464
|| || || | || | |||||||||| ||||| ||| | ||||||||||||
Sbjct 4468614 GGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGAC---CCGTCGATCCATTTCATTGC 4468558
Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506
||| | |||||||||| | | || || || || | ||||||
Sbjct 4468557 CCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGC 4468516
>seq1104
Length=4098138
Score = 98.7 bits (108), Expect = 1e-15
Identities = 139/195 (71%), Gaps = 3/195 (2%)
Strand=Plus/Plus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
|||||| || || ||||| || || | || || ||||| || || ||||| | ||
Sbjct 1191372 GTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAATCCCGGCATTAACCC 1191431
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
||||| |||| |||| | || |||||||| |||||||||||||| || || || ||
Sbjct 1191432 GCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAGATCCCTTCAACGCA 1191491
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464
|| || || | || | |||||||||| ||||| ||| | ||||||||| ||
Sbjct 1191492 GGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGAC---CCGTCGATCCATTTCATCGC 1191548
Query 117465 CCATTTCGCCTTCTT 117479
||| | ||||||||
Sbjct 1191549 CCACTGTGCCTTCTT 1191563
>seq555
Length=388411
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/201 (70%), Gaps = 14/201 (7%)
Strand=Plus/Plus
Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341
|| || |||||||| ||||| | || ||||| || || || | ||||||||| ||
Sbjct 76839 AATCCGTCCATCTCCGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTCCCTCC- 76897
Query 9342 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
|||| ||||| | | ||| | ||||| |||||||||||||||||||| |||||
Sbjct 76898 --ACCAAGTCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATG 76955
Query 9399 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454
||||| || |||| || | ||||| | ||| | |||||| || || ||
Sbjct 76956 CATGGCGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAAC 77011
Query 9455 ACCAACAAACATCTCCACAAA 9475
||| || || | |||||||||
Sbjct 77012 ACCCACGAAAAGCTCCACAAA 77032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589890466564760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |