Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq11203 95.1 1e-14 >seq11203 Length=4714577 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 ||||||||| ||||||||| ||||| || ||||| ||||||||||| ||||| || Sbjct 1280811 GAGAATCCTGCTTGGTACACTCAATACACACCGTATCAGGCTGAGATATCGCAGGGCAGG 1280870 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | ||| || | |||||| || ||| | |||||||| || || || | || || | Sbjct 1280871 CTTGAATCTCTGCTCAATTTTCAGACGATGATCACAGATCTCACTGGTCTCCCCATGTCG 1280930 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || ||| || | || |||| ||| || || || || |||||| Sbjct 1280931 AATGCCTCTTTACTCGACGAAGGAACCGCTGCTGCGGAGGCAATG 1280975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579124115280160