Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq11203 104 3e-17 >seq11203 Length=4714577 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 ||||||||| ||||||||| ||||| || ||||| ||||||||||| ||||| || Sbjct 1280811 GAGAATCCTGCTTGGTACACTCAATACACACCGTATCAGGCTGAGATATCGCAGGGCAGG 1280870 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | ||| || | |||||| || ||| | |||||||| ||||| || || || || | Sbjct 1280871 CTTGAATCTCTGCTCAATTTTCAGACGATGATCACAGATCTCACTGGTCTCCCCATGTCG 1280930 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || ||| || | || |||| ||| || || || || |||||| Sbjct 1280931 AATGCCTCTTTACTCGACGAAGGAACCGCTGCTGCGGAGGCAATG 1280975 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 1283612 TGGAGCTGATGTTTGCCATCTCAATCTTCACAAGACCTTCTGTATTCCTCATGGAGGTGG 1283671 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATT 159800 ||||| || | |||||||||||||| || ||| | ||||||| Sbjct 1283672 CGGTCCGGGTATGGGTCCTATTGGTGTTAAGAAGCATTTGGCACCATT 1283719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587961162010640