Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6695 127 1e-24 seq1 118 7e-22 seq5186 111 1e-19 seq7521 104 2e-17 seq10304 98.7 6e-16 seq7859 93.3 3e-14 >seq6695 Length=6602074 Score = 127 bits (140), Expect = 1e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| |||||||| ||||| ||||| | |||| ||||| |||| |||||||| Sbjct 810888 GTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGCAAGGGTTCGTCCATCCTCCAGCTG 810829 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||| || ||||| || || | |||||||| | || | ||| ||||| || |||||| Sbjct 810828 TTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTATCCTGAATCTT 810769 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | || || | || | || | |||||| || | ||||||||||| ||||| Sbjct 810768 CGCCTTAACATTGTCAATGGTATCTGAGCTCTCAACTTCAAGAGTTATGGTTTTCCCCGT 810709 Query 34958 GAGAGTCTTCACAAAGATCTGCATA 34982 ||| ||||| ||||||||||||||| Sbjct 810708 GAGGGTCTTGACAAAGATCTGCATA 810684 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| ||||||||| || || || || | |||| | | | | || || Sbjct 810437 ACCAAATGGAGAGTGGATTCTTTCTGGATATTGTAATCAGCAAGGGTCCTTCCGTCCTCG 810378 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || || | ||||||||| | || | || |||||||| Sbjct 810377 AGCTGTTTGCCAGCAAAGATAAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGG 810318 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | ||| | |||||| |||| ||| || ||||| Sbjct 810317 ATCTTTGCCTTCACGTTGTCAATGGTATCAGAGCTCTCAACCTCGAGGGTGATCGTTTTG 810258 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||||||||| |||||||||||| Sbjct 810257 CCGGTAAGAGTCTTCACGAAGATCTGCATA 810228 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || || || || | ||| | ||| |||| |||||||| || |||||||| Sbjct 811332 TTCCTTCTGGATATTGTAATCAGCTAGGGTGCGTCCATCCTCCAGCTGCTTCCCGGCAAA 811273 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | ||| |||||||| |||||| || ||| Sbjct 811272 GATGAGCCTCTGCTGGTCGGGTGGGATCCCTTCCTTGTCCTGGATCTTCGCCTTTACGTT 811213 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | ||| || |||| ||||||||||| |||||||| |||||||| Sbjct 811212 GTCAATGGTATCCGAGCTCTCCACCTCGAGAGTTATGGTTTTCCCCGTGAGGGTCTTCAC 811153 Query 34970 AAAGATCTGCAT 34981 || |||||||| Sbjct 811152 GAAAATCTGCAT 811141 Score = 102 bits (112), Expect = 5e-17 Identities = 153/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||| | ||| ||| ||||| || || ||||| | |||| ||||| |||| || Sbjct 810666 AACCAGGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCAGCAAGGGTTCGTCCATCCTC 810607 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||||||| || ||||| || |||| || ||||| | || | || ||||| || Sbjct 810606 CAGCTGTTTGCCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGGATTCCTTCCTTATCCTG 810547 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||||| || |||| || ||| | ||||| |||| ||| || | Sbjct 810546 GATCTTTGCCTTGAC--AT--TATCAATTGTGTCAGAGCTTTCAACCTCGAGGGTGATTG 810491 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || || || ||||| || |||||||||||| Sbjct 810490 TTTTGCCGGTAAGGGTCTTGACGAAGATCTGCATA 810456 >seq1 Length=11827220 Score = 118 bits (130), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||| ||||| ||||||| ||| | || |||| ||| Sbjct 5218666 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCC 5218725 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || | |||||||| | || | |||||||||||| Sbjct 5218726 AGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGG 5218785 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| ||| | ||| || |||| ||| ||||| Sbjct 5218786 ATCTTAGCCTTGAC--AT--TGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGT 5218841 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || |||||||||||||| ||||||||| Sbjct 5218842 CTTGCCGGTCAGAGTCTTCACAAATATCTGCATA 5218875 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||| | | | |||| | || || Sbjct 5219122 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCGGCCGTCCTCA 5219181 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || | |||||||| | || | ||||||||||| | Sbjct 5219182 AGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGA 5219241 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||| ||| | || | || | |||||| || | || || || || Sbjct 5219242 ATCTTAGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAAGTGATCGTCTTG 5219301 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||||| ||||| || ||||| |||||| Sbjct 5219302 CCCGTGAGGGTCTTGACGAAGATTTGCATA 5219331 >seq5186 Length=9353477 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || || || || || || ||||| |||| || ||||| |||||||| ||| Sbjct 4547327 TCTTTCTGTATATTGTAATCGGACAGAGTTCGTCCATCTTCGAGCTGCTTTCCGGCGAAT 4547268 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | || ||||| ||| | ||||||||||| ||||||| || ||| Sbjct 4547267 ATCAGCCTCTGTTGGTCGGGCGAGATTCCCTCCTTGTCCTGAATCTTCGACTTCACGTTC 4547208 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||||| || | |||||||||||||| ||||| |||||||| Sbjct 4547207 TCGATCGTGTCCGAGCTTTCAACCTCCAGTGTTATGGTTTTTCCGGTGAGGGTCTTCACG 4547148 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 4547147 AAAATCTGCAT 4547137 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || |||||||| ||||| ||||| | ||| | ||| |||| || Sbjct 7866045 AACCAAGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGCCAGGGTGCGTCCATCCTC 7866104 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || ||||| || || || | ||||||||| | || | ||||||||||| Sbjct 7866105 CAGCTGCTTCCCGGCGAAAATCAGCCTTTGCTGGTCCGGGGGAATACCCTCCTTGTCTTG 7866164 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| || ||| | || | || | ||| || |||| ||| || || || Sbjct 7866165 GATCTTGGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTAATAGTCTT 7866224 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || ||||||||||| Sbjct 7866225 ACCGGTGAGGGTCTTGACGAAGATCTGCAT 7866254 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | || || ||||| ||||| || |||| ||| | || |||| Sbjct 7865814 CAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGCAAGAGTACGACCATC 7865873 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| || |||||||| || || | |||||||| | || | ||||||||||| Sbjct 7865874 CTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATACCCTCCTTGTC 7865933 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||| ||| | || | || | ||| || || | || ||||| Sbjct 7865934 CTGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAACGTGATGGT 7865993 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || |||||||||||||||||||| Sbjct 7865994 CTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 7866026 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| ||| | || | || |||||||| ||||| || ||| Sbjct 7865608 TCCTTCTGGATGTTGTAGTCCGCAAGTGTACGGCCGTCCTCCAGCTGCTTTCCAGCGAAT 7865667 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 7865668 ATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGTATCTTCGCCTTCACGTTG 7865727 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || || | || || || || || || || |||||||| Sbjct 7865728 TCGATCGTGTCCGAGCTCTCCACTTCCAGTGTGATAGTCTTACCGGTCAGGGTCTTCACG 7865787 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 7865788 AAGATCTGCAT 7865798 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| | || ||||| |||| || | || || || || || Sbjct 4546872 TTCTTTCTGGATGTTGTAGTCAGCGAGTGTTCGTCCATCCTCTAATTGCTTCCCCGCGAA 4546813 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 ||| | | ||||| || | || | || |||||||| ||||| |||||| | Sbjct 4546812 TATCAACCTCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGATTTGAC--A 4546755 Query 34910 TGCTATCGATTCA--CCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | || ||||| ||| || |||||| |||| || ||||| ||||| || ||||||| Sbjct 4546754 TTCT--CGATTGTGTCCGAGCTCTCAACCTCGAGCGTGATGGTCTTTCCAGTAAGAGTCT 4546697 Query 34966 TCACAAAGATCTGCAT 34981 |||| ||||| ||||| Sbjct 4546696 TCACGAAGATTTGCAT 4546681 >seq7521 Length=6323785 Score = 104 bits (114), Expect = 2e-17 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || || || |||| ||| ||| | | || |||||||| || || ||||| Sbjct 4430287 TTCCTTCTGGATATTGTAATCCGCTAGGGTTCTTCCGTCCTCCAGCTGCTTCCCTGCAAA 4430346 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| |||||||| | || | ||||||||||| |||||| ||| || | Sbjct 4430347 GATGAGTCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCTTGAATCTTTGCTTTCAC--A 4430404 Query 34910 TGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| | ||| || ||| || || | || ||||| || |||||||| |||| Sbjct 4430405 T--TGTCGATTGTGTCCGAGCTCTCTACCTCCAGAGTGATGGTCTTGCCCGTGAGTGTCT 4430462 Query 34966 TCACAAAGATCTGCAT 34981 |||||||||||||||| Sbjct 4430463 TCACAAAGATCTGCAT 4430478 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/197 (71%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848 || ||||| ||||| || || | |||| | || |||| |||||||| || || |||| Sbjct 4430060 TCCTTCTGGATGTTGTAATCAGCCAAAG--TACGACCATCTTCCAGCTGCTTCCCTGCAA 4430117 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 | || || | |||||||| |||| | |||||||||||| |||||| || || Sbjct 4430118 AGATGAGCCTCTGCTGGTCCGGCGGTATCCCCTCCTTGTCTTGGATCTTCGCCTTCAC-- 4430175 Query 34909 ATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || ||||||| || | ||| || || | ||||| || || ||||| | ||| Sbjct 4430176 AT--TATCGATCGTGTCTGAGCTCTCCACCTCCAATGTTATCGTCTTCCCCGTCAATGTC 4430233 Query 34965 TTCACAAAGATCTGCAT 34981 ||||||||||||||||| Sbjct 4430234 TTCACAAAGATCTGCAT 4430250 >seq10304 Length=4769457 Score = 98.7 bits (108), Expect = 6e-16 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || |||| |||||| ||||| || Sbjct 685583 TCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCCAACTGTTTCCCGGCGAAA 685524 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||| |||||||| ||||| ||||| || Sbjct 685523 ATCAGCCGCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGGATCTTAGCCTTGAC--AT 685466 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || ||| || || | ||||||||| || ||||| || || || Sbjct 685465 --TGTCGATGGTGTCGGAGGACTCGACTTCAAGGGTTATGGTCTTCCCCGTTAGTGTTTT 685408 Query 34967 CACAAAGATCTGCATATT 34984 ||| ||||||||||| || Sbjct 685407 CACGAAGATCTGCATCTT 685390 >seq7859 Length=784361 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 34748 ATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805 ||||| |||| ||||| | |||||| |||| ||| | ||| |||||||| ||||| Sbjct 400325 ATCATGGTTCCACCCCTGAGCCTCAAGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTG 400266 Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 ||||| | ||| ||||| |||| || ||||| || || |||||||| || | ||| || Sbjct 400265 TAGTCTGCTAGGGTTCGTCCATCTTCTAGCTGCTTCCCAGCAAATATCAGCCTTTGTTGA 400206 Query 34866 TCTTGCGGCACCCCCTCCTTGTC 34888 || | || | ||||||||||| Sbjct 400205 TCAGGTGGTATGCCCTCCTTGTC 400183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324585137174472