Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3309 98.7 1e-15 >seq3309 Length=3363706 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || | || | | ||| || |||||||| Sbjct 2883798 CCCCCTTGATCAACATAACGAGCAGTATCATTGAACACCCGAAGCATAGGAACAATACCG 2883857 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| ||||||||| | || | ||||| || |||| Sbjct 2883858 TTAGATGTCCCATTCGTGCCACGAATGTAACTTCCAGTTGCACGGATATTGTGAACTGAA 2883917 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | |||||||||||| || ||| || | ||||| ||| ||||| ||||| || Sbjct 2883918 ACACCTATACCACCAGCTGATTTGCTAATAACGGCACATTCTTTCAGGGTGTCATATATG 2883977 Query 48540 CCTTCTATACTATCATCTATCATA 48563 || || || || |||||| ||||| Sbjct 2883978 CCCTCAATGCTGTCATCTTTCATA 2884001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562022734116360