Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq7521 125 6e-24 seq1 116 3e-21 seq6695 111 1e-19 seq5186 111 1e-19 >seq7521 Length=6323785 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| ||||| || || ||||||||||| || | ||||| | || |||| || Sbjct 4430275 ATGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCTAGGGTTCTTCCGTCCTCCAGCTG 4430334 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| |||||||| || | | ||| || || || ||||| || || || |||||||| || Sbjct 4430335 CTTCCCTGCAAAGATGAGTCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCTTGAATCTT 4430394 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||| ||| | || | ||||| || | || || || ||||||| || ||||| || Sbjct 4430395 TGCTTTCACATTGTCGATTGTGTCCGAGCTCTCTACCTCCAGAGTGATGGTCTTGCCCGT 4430454 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 4430455 GAGTGTCTTCACAAAGATCTGCAT 4430478 >seq1 Length=11827220 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| |||| | ||| | || || ||||||||||| || || || || ||||| || | Sbjct 5218646 TTCCACCTCGCAGACGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCG 5218705 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || | | |||| |||| |||||||| ||||| |||| | ||| || || || | Sbjct 5218706 CCAGGGTGCGGCCATCCTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTG 5218765 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || || || || || || || || || ||| | || | |||||||| | || | Sbjct 5218766 GGATCCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAGCTCTCGA 5218825 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || |||| || |||||||| | ||| || |||||||||||||| Sbjct 5218826 CCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACAAATATCTGCAT 5218874 >seq6695 Length=6602074 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | || ||||| ||||| || || |||||||| || || | |||| | Sbjct 810672 ACGGAGAACCAGGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCAGCAAGGGTTCGTCC 810613 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| || || || ||||| || | | |||||| || || || || ||||| || Sbjct 810612 ATCCTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGGATTCCTTCCTT 810553 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| || || ||| || ||| | || | |||||||| |||| || || || |||| Sbjct 810552 ATCCTGGATCTTTGCCTTGACATTATCAATTGTGTCAGAGCTTTCAACCTCGAGGGTGAT 810493 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||||||| | || || || || |||||||| Sbjct 810492 TGTTTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 810457 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || ||||| || || ||||| || || | |||| |||| |||| || Sbjct 810887 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGCAAGGGTTCGTCCATCCTCCAGCTGT 810828 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| || || || || || ||||| ||||| ||||| || Sbjct 810827 TTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTATCCTGAATCTTC 810768 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || || || | || ||||||||||| | ||||| || || Sbjct 810767 GCCTTAACATTGTCAATGGTATCTGAGCTCTCAACTTCAAGAGTTATGGTTTTCCCCGTG 810708 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 | || || ||||| |||||||| |||||||| Sbjct 810707 AGGGTCTTGACAAAGATCTGCATACCACCGCGAAGA 810672 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| || || |||||||| || ||||||||||| || | || || | || || Sbjct 810437 ACCAAATGGAGAGTGGATTCTTTCTGGATATTGTAATCAGCAAGGGTCCTTCCGTCCTCG 810378 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || || ||||| || | | || || || || || || ||||| || || || Sbjct 810377 AGCTGTTTGCCAGCAAAGATAAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGG 810318 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || || | || | || ||||| | || || || || |||| ||||||| Sbjct 810317 ATCTTTGCCTTCACGTTGTCAATGGTATCAGAGCTCTCAACCTCGAGGGTGATCGTTTTG 810258 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| || || || |||||||| Sbjct 810257 CCGGTAAGAGTCTTCACGAAGATCTGCAT 810229 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||| || || ||||||||||| || | || | |||| |||| ||| Sbjct 811343 TGAAGGGTCGATTCCTTCTGGATATTGTAATCAGCTAGGGTGCGTCCATCCTCCAGCTGC 811284 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| || ||||| || || ||||| || || || || || Sbjct 811283 TTCCCGGCAAAGATGAGCCTCTGCTGGTCGGGTGGGATCCCTTCCTTGTCCTGGATCTTC 811224 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||||| | || | || || || | ||||| || ||||| | ||||| || || Sbjct 811223 GCCTTTACGTTGTCAATGGTATCCGAGCTCTCCACCTCGAGAGTTATGGTTTTCCCCGTG 811164 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 811163 AGGGTCTTCACGAAAATCTGCAT 811141 >seq5186 Length=9353477 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | || | ||| || || || || || || ||||||||||| | Sbjct 4547137 TTCCTCCACGGAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCAG 4547078 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || || |||| |||| || || || || || |||| | ||| ||||| || | Sbjct 4547077 CCAGTGTCCTCCCATCTTCCAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGGG 4547018 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || || || || || ||| ||| | || | ||||| || | |||| Sbjct 4547017 GAATCCCTTCCTTGTCCTGGATCTTGGTTTTGACATTCTCGATCGTGTCGGAGCTCTCCA 4546958 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||||| ||| |||||||| | ||||| || || || ||||| Sbjct 4546957 CCTCCAGAGTGATCGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4546909 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || ||||| |||||||||||||||| | ||||| |||| || | ||| Sbjct 4547339 TGAAGAGTCGACTCTTTCTGTATATTGTAATCGGACAGAGTTCGTCCATCTTCGAGCTGC 4547280 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || ||||||| | |||||| ||||||| || || || || || ||||| || Sbjct 4547279 TTTCCGGCGAATATCAGCCTCTGTTGGTCGGGCGAGATTCCCTCCTTGTCCTGAATCTTC 4547220 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || |||| || || || || | ||||| ||||| Sbjct 4547219 GACTTCACGTTCTCGATCGTGTCCGAGCTTTCAACCTCCAGTGTTATGGTTTTTCCGGTG 4547160 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 4547159 AGGGTCTTCACGAAAATCTGCAT 4547137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396219241702893