Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq5186 123 2e-23
seq7521 102 6e-17
seq5265 102 6e-17
seq6636 91.5 1e-13
seq7859 89.7 4e-13
>seq5186
Length=9353477
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || | ||| ||||||||||| || || || ||| || || || |||||||| |
Sbjct 7865800 CCACCACGTAGACGCAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGCA 7865859
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | ||| | || |||| ||||||||||||||| ||||| | ||| || |||| ||||
Sbjct 7865860 AGAGTACGACCATCCTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 7865919
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||||||||| ||||| ||| || | | | || || |||||||
Sbjct 7865920 ATACCCTCCTTGTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCCACC 7865979
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|||| ||| || || || || |||| || || ||||| |||||||||
Sbjct 7865980 TCCAACGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCATC 7866027
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||||| ||| ||||| ||| || || ||||||||||||| || | |
Sbjct 4547126 AGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCAGCCAGTGTCCTC 4547067
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| ||| || ||||| || ||||| | ||| ||||||| ||||| || |||
Sbjct 4547066 CCATCTTCCAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGGGGAATCCCTTCC 4547007
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| ||| ||| | | | || || ||||||||||| ||
Sbjct 4547006 TTGTCCTGGATCTTGGTTTTGACATTCTCGATCGTGTCGGAGCTCTCCACCTCCAGAGTG 4546947
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||||| || || || | ||||| || || || ||||||
Sbjct 4546946 ATCGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATC 4546908
>seq7521
Length=6323785
Score = 102 bits (112), Expect = 6e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|| || || ||||||||||| | ||| ||| |||| |||| |||||| || |||||
Sbjct 4430288 TCCTTCTGGATATTGTAATCCGCTAGGGTTCTTCCGTCCTCCAGCTGCTTCCCTGCAAAG 4430347
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
|| |||| ||| || |||| ||||| ||||||||||| ||||||| ||| |||
Sbjct 4430348 ATGAGTCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTG 4430407
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | | || || ||| ||||||| || || || || ||||| | || || |||
Sbjct 4430408 TCGATTGTGTCCGAGCTCTCTACCTCCAGAGTGATGGTCTTGCCCGTGAGTGTCTTCACA 4430467
Query 48756 AAAATCTGCAT 48766
|| ||||||||
Sbjct 4430468 AAGATCTGCAT 4430478
Score = 100 bits (110), Expect = 2e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || || |||||||||| | | | ||| | || |||| |||||| || |||||
Sbjct 4430059 CTCCTTCTGGATGTTGTAATCAGCCAAAGTACGACCATCTTCCAGCTGCTTCCCTGCAAA 4430118
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || | ||| || |||| || | ||||||||||| ||||| || |||
Sbjct 4430119 GATGAGCCTCTGCTGGTCCGGCGGTATCCCCTCCTTGTCTTGGATCTTCGCCTTCACATT 4430178
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | | ||||| ||||||||||| || ||||| || |||||||| || || ||
Sbjct 4430179 ATCGATCGTGTCTGAGCTCTCCACCTCCAATGTTATCGTCTTCCCCGTCAATGTCTTCAC 4430238
Query 48755 AAAAATCTGCATC 48767
||| |||||||||
Sbjct 4430239 AAAGATCTGCATC 4430251
>seq5265
Length=2761455
Score = 102 bits (112), Expect = 6e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| |||| |||||| | ||| || || |||||| ||||||||||| || | |
Sbjct 1298818 CCACCCCTGAGCCTCAACACTAGATGGAGAGTAGACTCTTTCTGAATATTGTAGTCTGCT 1298877
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| |||| | || || | |||||||| ||||||||||| | ||||||||| | ||
Sbjct 1298878 AGGGTTCGTCCATCTTCTAGTTGCTTACCAGCAAATATCAGCCTCTGTTGATCAGGTGGT 1298937
Query 48660 ACGCCCTCCTTGTC 48673
| ||||||||||||
Sbjct 1298938 ATGCCCTCCTTGTC 1298951
>seq6636
Length=1297912
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || || || || | ||||| || ||||| || || || || ||||| || |
Sbjct 787815 CGCCTCCTCTGAGACGGAGAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGG 787874
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
|| | ||| |||| |||| ||||| ||||| || |||| |||||| || |||| |
Sbjct 787875 CGAGTGTCCGACCGTCCTCCAGTTGCTTCCCGGCGAAGATCAATCGCTGCTGGTCCGGCG 787934
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
| | || |||||||| |||||| || ||| | | | || || | ||| |
Sbjct 787935 GGATTCCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATCGTGTCGGAGGACTCGA 787994
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|||| | || || || || ||||| | ||||| |||||||||||||||
Sbjct 787995 CCTCTAGGGTTATAGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCATC 788044
>seq7859
Length=784361
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| |||| ||| |||| || || ||| |||||| || || ||||| || | |
Sbjct 400316 CCACCCCTGAGCCTCAAGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGCT 400257
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| |||| | || || | |||||| || ||||||||||| | |||||||| | ||
Sbjct 400256 AGGGTTCGTCCATCTTCTAGCTGCTTCCCAGCAAATATCAGCCTTTGTTGATCAGGTGGT 400197
Query 48660 ACGCCCTCCTTGTC 48673
| ||||||||||||
Sbjct 400196 ATGCCCTCCTTGTC 400183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380880731849427
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |