Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5186 123 2e-23 seq7521 102 6e-17 seq5265 102 6e-17 seq6636 91.5 1e-13 seq7859 89.7 4e-13 >seq5186 Length=9353477 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| ||||||||||| || || || ||| || || || |||||||| | Sbjct 7865800 CCACCACGTAGACGCAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGCA 7865859 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || |||| ||||||||||||||| ||||| | ||| || |||| |||| Sbjct 7865860 AGAGTACGACCATCCTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 7865919 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| ||| || | | | || || ||||||| Sbjct 7865920 ATACCCTCCTTGTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCCACC 7865979 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||| || || || || |||| || || ||||| ||||||||| Sbjct 7865980 TCCAACGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCATC 7866027 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| ||||| ||| || || ||||||||||||| || | | Sbjct 4547126 AGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCAGCCAGTGTCCTC 4547067 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || ||||| || ||||| | ||| ||||||| ||||| || ||| Sbjct 4547066 CCATCTTCCAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGGGGAATCCCTTCC 4547007 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| ||| | | | || || ||||||||||| || Sbjct 4547006 TTGTCCTGGATCTTGGTTTTGACATTCTCGATCGTGTCGGAGCTCTCCACCTCCAGAGTG 4546947 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || || | ||||| || || || |||||| Sbjct 4546946 ATCGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATC 4546908 >seq7521 Length=6323785 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || ||||||||||| | ||| ||| |||| |||| |||||| || ||||| Sbjct 4430288 TCCTTCTGGATATTGTAATCCGCTAGGGTTCTTCCGTCCTCCAGCTGCTTCCCTGCAAAG 4430347 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || |||| ||| || |||| ||||| ||||||||||| ||||||| ||| ||| Sbjct 4430348 ATGAGTCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTG 4430407 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||| ||||||| || || || || ||||| | || || ||| Sbjct 4430408 TCGATTGTGTCCGAGCTCTCTACCTCCAGAGTGATGGTCTTGCCCGTGAGTGTCTTCACA 4430467 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 4430468 AAGATCTGCAT 4430478 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || |||||||||| | | | ||| | || |||| |||||| || ||||| Sbjct 4430059 CTCCTTCTGGATGTTGTAATCAGCCAAAGTACGACCATCTTCCAGCTGCTTCCCTGCAAA 4430118 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | ||| || |||| || | ||||||||||| ||||| || ||| Sbjct 4430119 GATGAGCCTCTGCTGGTCCGGCGGTATCCCCTCCTTGTCTTGGATCTTCGCCTTCACATT 4430178 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | ||||| ||||||||||| || ||||| || |||||||| || || || Sbjct 4430179 ATCGATCGTGTCTGAGCTCTCCACCTCCAATGTTATCGTCTTCCCCGTCAATGTCTTCAC 4430238 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 4430239 AAAGATCTGCATC 4430251 >seq5265 Length=2761455 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| |||||| | ||| || || |||||| ||||||||||| || | | Sbjct 1298818 CCACCCCTGAGCCTCAACACTAGATGGAGAGTAGACTCTTTCTGAATATTGTAGTCTGCT 1298877 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| | || || | |||||||| ||||||||||| | ||||||||| | || Sbjct 1298878 AGGGTTCGTCCATCTTCTAGTTGCTTACCAGCAAATATCAGCCTCTGTTGATCAGGTGGT 1298937 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 1298938 ATGCCCTCCTTGTC 1298951 >seq6636 Length=1297912 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || || || || | ||||| || ||||| || || || || ||||| || | Sbjct 787815 CGCCTCCTCTGAGACGGAGAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGG 787874 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | ||| |||| |||| ||||| ||||| || |||| |||||| || |||| | Sbjct 787875 CGAGTGTCCGACCGTCCTCCAGTTGCTTCCCGGCGAAGATCAATCGCTGCTGGTCCGGCG 787934 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | || |||||||| |||||| || ||| | | | || || | ||| | Sbjct 787935 GGATTCCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATCGTGTCGGAGGACTCGA 787994 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| | || || || || ||||| | ||||| ||||||||||||||| Sbjct 787995 CCTCTAGGGTTATAGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCATC 788044 >seq7859 Length=784361 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| ||| |||| || || ||| |||||| || || ||||| || | | Sbjct 400316 CCACCCCTGAGCCTCAAGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGCT 400257 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| | || || | |||||| || ||||||||||| | |||||||| | || Sbjct 400256 AGGGTTCGTCCATCTTCTAGCTGCTTCCCAGCAAATATCAGCCTTTGTTGATCAGGTGGT 400197 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 400196 ATGCCCTCCTTGTC 400183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380880731849427